RNA–Protein interactions for RNA: ENST00000414632.5

VPS41-205, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-205ENST00000414632 DDX12PQ92771 950 aa7.57□□□□□ -1.2
VPS41-205ENST00000414632 L3MBTL3Q96JM7 780 aaPredicted RBP7.57□□□□□ -1.2
VPS41-205ENST00000414632 ZMYND15Q9H091 742 aa7.57□□□□□ -1.2
VPS41-205ENST00000414632 MYOM3Q5VTT5 1437 aa7.57□□□□□ -1.2
VPS41-205ENST00000414632 C9orf84Q5VXU9 1444 aa7.57□□□□□ -1.2
VPS41-205ENST00000414632 ATP10AO60312 1499 aa7.56□□□□□ -1.2
VPS41-205ENST00000414632 MBD5Q9P267 1494 aa7.56□□□□□ -1.2
VPS41-205ENST00000414632 MLH3Q9UHC1 1453 aa7.56□□□□□ -1.2
VPS41-205ENST00000414632 ZNF316A6NFI3 1004 aaPredicted RBP7.56□□□□□ -1.2
VPS41-205ENST00000414632 FCHSD2O94868 740 aa7.56□□□□□ -1.2
VPS41-205ENST00000414632 POTEIP0CG38 1075 aa7.56□□□□□ -1.2
VPS41-205ENST00000414632 SPAG9O60271 1321 aaKnown RBP7.55□□□□□ -1.2
VPS41-205ENST00000414632 ARHGEF5Q12774 1597 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 KIAA1107Q9UPP5 1409 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 PLEKHG3A1L390 1219 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 TBC1D12O60347 775 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 FECHP22830 423 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 HIC1Q14526 733 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 AMHR2Q16671 573 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 TMEM92Q6UXU6 159 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 CCDC141Q6ZP82 1450 aa7.55□□□□□ -1.2
VPS41-205ENST00000414632 PARP9Q8IXQ6 854 aa7.54□□□□□ -1.2
VPS41-205ENST00000414632 PELP1Q8IZL8 1130 aaKnown RBP7.54□□□□□ -1.2
VPS41-205ENST00000414632 DDRGK1Q96HY6 314 aa7.54□□□□□ -1.2
VPS41-205ENST00000414632 REREQ9P2R6 1566 aa7.54□□□□□ -1.2
VPS41-205ENST00000414632 FGD6Q6ZV73 1430 aa7.53□□□□□ -1.2
VPS41-205ENST00000414632 DNMT1P26358 1616 aaKnown RBP7.53□□□□□ -1.2
VPS41-205ENST00000414632 PLXNC1O60486 1568 aa7.53□□□□□ -1.2
VPS41-205ENST00000414632 CLTCQ00610 1675 aaKnown RBP7.53□□□□□ -1.2
VPS41-205ENST00000414632 MIA2Q96PC5 1412 aa7.52□□□□□ -1.2
VPS41-205ENST00000414632 C3P01024 1663 aa7.52□□□□□ -1.21
VPS41-205ENST00000414632 PTPRMP28827 1452 aa7.52□□□□□ -1.21
VPS41-205ENST00000414632 EVI5O60447 810 aa7.52□□□□□ -1.21
VPS41-205ENST00000414632 PRIM1P49642 420 aaKnown RBP7.52□□□□□ -1.21
VPS41-205ENST00000414632 SLC39A7Q92504 469 aa7.52□□□□□ -1.21
VPS41-205ENST00000414632 MAST1Q9Y2H9 1570 aa7.51□□□□□ -1.21
VPS41-205ENST00000414632 A2MP01023 1474 aa7.51□□□□□ -1.21
VPS41-205ENST00000414632 C7P10643 843 aa7.51□□□□□ -1.21
VPS41-205ENST00000414632 RSPH6AQ9H0K4 717 aa7.51□□□□□ -1.21
VPS41-205ENST00000414632 TCOF1Q13428 1488 aaKnown RBP7.5□□□□□ -1.21
VPS41-205ENST00000414632 SEC24BO95487 1268 aa7.5□□□□□ -1.21
VPS41-205ENST00000414632 PTGDRQ13258 359 aa7.5□□□□□ -1.21
VPS41-205ENST00000414632 FAM50AQ14320 339 aaKnown RBP7.5□□□□□ -1.21
VPS41-205ENST00000414632 AGLP35573 1532 aa7.5□□□□□ -1.21
VPS41-205ENST00000414632 TTLL12Q14166 644 aaPredicted RBP7.49□□□□□ -1.21
VPS41-205ENST00000414632 COLQQ9Y215 455 aaPredicted RBP7.49□□□□□ -1.21
VPS41-205ENST00000414632 RTEL1-TNFRSF6BF6WH68 1400 aa7.49□□□□□ -1.21
VPS41-205ENST00000414632 ABCC5O15440 1437 aa7.49□□□□□ -1.21
VPS41-205ENST00000414632 DAPK1P53355 1430 aa7.49□□□□□ -1.21
VPS41-205ENST00000414632 CEP152O94986 1710 aa7.49□□□□□ -1.21
VPS41-205ENST00000414632 TSPY4P0CV99 314 aa7.48□□□□□ -1.21
VPS41-205ENST00000414632 TSPY10P0CW01 314 aa7.48□□□□□ -1.21
VPS41-205ENST00000414632 CEBPAP49715 358 aaPredicted RBP7.48□□□□□ -1.21
VPS41-205ENST00000414632 METRNQ9UJH8 293 aa7.48□□□□□ -1.21
VPS41-205ENST00000414632 CHIC2Q9UKJ5 165 aa7.48□□□□□ -1.21
VPS41-205ENST00000414632 CFAP65Q6ZU64 1925 aaKnown RBP7.48□□□□□ -1.21
VPS41-205ENST00000414632 MROH2AA6NES4 1674 aa7.47□□□□□ -1.21
VPS41-205ENST00000414632 PREX1Q8TCU6 1659 aa7.47□□□□□ -1.21
VPS41-205ENST00000414632 ITGAEP38570 1179 aa7.47□□□□□ -1.21
VPS41-205ENST00000414632 GGT6Q6P531 493 aa7.47□□□□□ -1.21
VPS41-205ENST00000414632 PTCD2Q8WV60 388 aaKnown RBP7.47□□□□□ -1.21
VPS41-205ENST00000414632 EIF2AK4Q9P2K8 1649 aaKnown RBP7.47□□□□□ -1.21
VPS41-205ENST00000414632 SHANK2Q9UPX8 1470 aa7.47□□□□□ -1.21
VPS41-205ENST00000414632 RNF17Q9BXT8 1623 aaKnown RBP7.46□□□□□ -1.21
VPS41-205ENST00000414632 ANO8Q9HCE9 1232 aaPredicted RBP7.46□□□□□ -1.22
VPS41-205ENST00000414632 GOPCQ9HD26 462 aa7.46□□□□□ -1.22
VPS41-205ENST00000414632 DHX29Q7Z478 1369 aaKnown RBP7.46□□□□□ -1.22
VPS41-205ENST00000414632 MROH1Q8NDA8 1641 aa7.45□□□□□ -1.22
VPS41-205ENST00000414632 KIF3BO15066 747 aa7.45□□□□□ -1.22
VPS41-205ENST00000414632 RSPH4AQ5TD94 716 aa7.45□□□□□ -1.22
VPS41-205ENST00000414632 GIGYF2Q6Y7W6 1299 aaKnown RBP7.45□□□□□ -1.22
VPS41-205ENST00000414632 ESF1Q9H501 851 aaKnown RBP7.45□□□□□ -1.22
VPS41-205ENST00000414632 RRP7BPQ9NSQ0 103 aa7.45□□□□□ -1.22
VPS41-205ENST00000414632 DUOX2Q9NRD8 1548 aa7.45□□□□□ -1.22
VPS41-205ENST00000414632 KIF15Q9NS87 1388 aa7.45□□□□□ -1.22
VPS41-205ENST00000414632 PTPRKQ15262 1439 aa7.44□□□□□ -1.22
VPS41-205ENST00000414632 MS4A1P11836 297 aa7.44□□□□□ -1.22
VPS41-205ENST00000414632 FLIIQ13045 1269 aa7.44□□□□□ -1.22
VPS41-205ENST00000414632 REPIN1Q9BWE0 567 aaKnown RBP7.44□□□□□ -1.22
VPS41-205ENST00000414632 NPDC1Q9NQX5 325 aaPredicted RBP7.44□□□□□ -1.22
VPS41-205ENST00000414632 CAMSAP1Q5T5Y3 1602 aa7.44□□□□□ -1.22
VPS41-205ENST00000414632 LMTK3Q96Q04 1460 aa7.43□□□□□ -1.22
VPS41-205ENST00000414632 KDM5DQ9BY66 1539 aa7.43□□□□□ -1.22
VPS41-205ENST00000414632 DEPDC5O75140 1603 aa7.43□□□□□ -1.22
VPS41-205ENST00000414632 MYO3AQ8NEV4 1616 aa7.43□□□□□ -1.22
VPS41-205ENST00000414632 EPAS1Q99814 870 aa7.43□□□□□ -1.22
VPS41-205ENST00000414632 ZC3H13Q5T200 1668 aaKnown RBP7.43□□□□□ -1.22
VPS41-205ENST00000414632 POTEFA5A3E0 1075 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 MAP3K7O43318 606 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 SLC34A2O95436 690 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 PCMTD1Q96MG8 357 aaPredicted RBP7.42□□□□□ -1.22
VPS41-205ENST00000414632 CDHR5Q9HBB8 845 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 ANKRD30AQ9BXX3 1397 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 CNTLNQ9NXG0 1405 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 ADGRL2O95490 1459 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 ABCC3O15438 1527 aa7.42□□□□□ -1.22
VPS41-205ENST00000414632 POTEMA6NI47 508 aa7.41□□□□□ -1.22
VPS41-205ENST00000414632 PHF14O94880 888 aa7.41□□□□□ -1.22
VPS41-205ENST00000414632 HSPA2P54652 639 aa7.41□□□□□ -1.22
VPS41-205ENST00000414632 EN1Q05925 392 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms