RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 POGKQ9P215 609 aa9.2□□□□□ -0.94
USP54-202ENST00000413442 STK26Q9P289 416 aa9.2□□□□□ -0.94
USP54-202ENST00000413442 TIMELESSQ9UNS1 1208 aa9.2□□□□□ -0.94
USP54-202ENST00000413442 C1orf167Q5SNV9 1468 aa9.2□□□□□ -0.94
USP54-202ENST00000413442 CDC42BPGQ6DT37 1551 aa9.2□□□□□ -0.94
USP54-202ENST00000413442 NPHP3Q7Z494 1330 aa9.19□□□□□ -0.94
USP54-202ENST00000413442 CLSPNQ9HAW4 1339 aa9.19□□□□□ -0.94
USP54-202ENST00000413442 NALCNQ8IZF0 1738 aa9.19□□□□□ -0.94
USP54-202ENST00000413442 PSME1Q06323 249 aa9.18□□□□□ -0.94
USP54-202ENST00000413442 WAPLQ7Z5K2 1190 aa9.18□□□□□ -0.94
USP54-202ENST00000413442 NHSL1Q5SYE7 1610 aa9.17□□□□□ -0.94
USP54-202ENST00000413442 SOS2Q07890 1332 aaPredicted RBP9.17□□□□□ -0.94
USP54-202ENST00000413442 PRAM1Q96QH2 718 aa9.17□□□□□ -0.94
USP54-202ENST00000413442 SHPRHQ149N8 1683 aa9.16□□□□□ -0.94
USP54-202ENST00000413442 COL16A1Q07092 1604 aaPredicted RBP9.16□□□□□ -0.94
USP54-202ENST00000413442 ADGRB1O14514 1584 aa9.16□□□□□ -0.94
USP54-202ENST00000413442 ASXL1Q8IXJ9 1541 aa9.16□□□□□ -0.94
USP54-202ENST00000413442 ANKARQ7Z5J8 1434 aa9.16□□□□□ -0.94
USP54-202ENST00000413442 ESCO1Q5FWF5 840 aa9.16□□□□□ -0.94
USP54-202ENST00000413442 L3MBTL2Q969R5 705 aa9.15□□□□□ -0.94
USP54-202ENST00000413442 TRAK1Q9UPV9 953 aa9.15□□□□□ -0.94
USP54-202ENST00000413442 MED1Q15648 1581 aaPredicted RBP9.15□□□□□ -0.95
USP54-202ENST00000413442 FMN2Q9NZ56 1722 aa9.14□□□□□ -0.95
USP54-202ENST00000413442 KIF1AQ12756 1690 aa9.14□□□□□ -0.95
USP54-202ENST00000413442 WASLO00401 505 aaPredicted RBP9.14□□□□□ -0.95
USP54-202ENST00000413442 ZNF772Q68DY9 489 aaPredicted RBP9.14□□□□□ -0.95
USP54-202ENST00000413442 ORAI2Q96SN7 254 aa9.14□□□□□ -0.95
USP54-202ENST00000413442 ADGRB2O60241 1585 aa9.14□□□□□ -0.95
USP54-202ENST00000413442 PHF8Q9UPP1 1060 aa9.13□□□□□ -0.95
USP54-202ENST00000413442 NEUROD1Q13562 356 aa9.12□□□□□ -0.95
USP54-202ENST00000413442 SIN3AQ96ST3 1273 aa9.12□□□□□ -0.95
USP54-202ENST00000413442 BRD4O60885 1362 aaPredicted RBP9.12□□□□□ -0.95
USP54-202ENST00000413442 TONSLQ96HA7 1378 aa9.12□□□□□ -0.95
USP54-202ENST00000413442 SOCS7O14512 581 aa9.11□□□□□ -0.95
USP54-202ENST00000413442 FOXO3O43524 673 aa9.11□□□□□ -0.95
USP54-202ENST00000413442 KRT28Q7Z3Y7 464 aa9.11□□□□□ -0.95
USP54-202ENST00000413442 PUS7Q96PZ0 661 aaKnown RBP9.11□□□□□ -0.95
USP54-202ENST00000413442 CCDC61Q9Y6R9 512 aa9.11□□□□□ -0.95
USP54-202ENST00000413442 SBNO1A3KN83 1393 aa9.11□□□□□ -0.95
USP54-202ENST00000413442 PLEKHH1Q9ULM0 1364 aa9.11□□□□□ -0.95
USP54-202ENST00000413442 MEX3CQ5U5Q3 659 aaKnown RBP9.1□□□□□ -0.95
USP54-202ENST00000413442 ARHGEF28Q8N1W1 1705 aaKnown RBP9.1□□□□□ -0.95
USP54-202ENST00000413442 GPRASP1Q5JY77 1395 aa9.1□□□□□ -0.95
USP54-202ENST00000413442 PNPLA6Q8IY17 1366 aa9.1□□□□□ -0.95
USP54-202ENST00000413442 COL22A1Q8NFW1 1626 aaPredicted RBP9.09□□□□□ -0.95
USP54-202ENST00000413442 SPATA31A3Q5VYP0 1347 aa9.09□□□□□ -0.95
USP54-202ENST00000413442 CENPJQ9HC77 1338 aaPredicted RBP9.09□□□□□ -0.95
USP54-202ENST00000413442 ITSN1Q15811 1721 aa9.09□□□□□ -0.95
USP54-202ENST00000413442 PLEKHG3A1L390 1219 aa9.09□□□□□ -0.95
USP54-202ENST00000413442 NBPF1Q3BBV0 1214 aa9.09□□□□□ -0.95
USP54-202ENST00000413442 PIAS4Q8N2W9 510 aaPredicted RBP9.09□□□□□ -0.95
USP54-202ENST00000413442 TULP4Q9NRJ4 1543 aa9.09□□□□□ -0.95
USP54-202ENST00000413442 ARHGEF10O15013 1369 aa9.09□□□□□ -0.95
USP54-202ENST00000413442 RGPD8O14715 1765 aaPredicted RBP9.09□□□□□ -0.95
USP54-202ENST00000413442 TRPM1Q7Z4N2 1603 aa9.09□□□□□ -0.95
USP54-202ENST00000413442 EVC2Q86UK5 1308 aa9.08□□□□□ -0.96
USP54-202ENST00000413442 MINK1Q8N4C8 1332 aaPredicted RBP9.08□□□□□ -0.96
USP54-202ENST00000413442 NUDT16Q96DE0 195 aaKnown RBP9.08□□□□□ -0.96
USP54-202ENST00000413442 ZNF692Q9BU19 519 aaPredicted RBP9.08□□□□□ -0.96
USP54-202ENST00000413442 CDK19Q9BWU1 502 aa9.08□□□□□ -0.96
USP54-202ENST00000413442 ROCK2O75116 1388 aaKnown RBP9.08□□□□□ -0.96
USP54-202ENST00000413442 SBNO2Q9Y2G9 1366 aa9.08□□□□□ -0.96
USP54-202ENST00000413442 PXDNQ92626 1479 aa9.08□□□□□ -0.96
USP54-202ENST00000413442 SAFB2Q14151 953 aaKnown RBP eCLIP9.07□□□□□ -0.96
USP54-202ENST00000413442 NGDNQ8NEJ9 315 aaKnown RBP9.07□□□□□ -0.96
USP54-202ENST00000413442 NGLY1Q96IV0 654 aa9.07□□□□□ -0.96
USP54-202ENST00000413442 FNBP4Q8N3X1 1017 aaPredicted RBP9.06□□□□□ -0.96
USP54-202ENST00000413442 RGS17Q9UGC6 210 aaPredicted RBP9.06□□□□□ -0.96
USP54-202ENST00000413442 POLR3AO14802 1390 aaPredicted RBP9.05□□□□□ -0.96
USP54-202ENST00000413442 NUTM2FA1L443 756 aa9.05□□□□□ -0.96
USP54-202ENST00000413442 NUTM2BA6NNL0 878 aaPredicted RBP9.05□□□□□ -0.96
USP54-202ENST00000413442 NUTM2EB1AL46 878 aaPredicted RBP9.05□□□□□ -0.96
USP54-202ENST00000413442 ILDR2Q71H61 639 aa9.05□□□□□ -0.96
USP54-202ENST00000413442 NUTM2AQ8IVF1 878 aaPredicted RBP9.05□□□□□ -0.96
USP54-202ENST00000413442 CARD11Q9BXL7 1154 aa9.05□□□□□ -0.96
USP54-202ENST00000413442 CDK12Q9NYV4 1490 aaPredicted RBP9.04□□□□□ -0.96
USP54-202ENST00000413442 RXRBP28702 533 aa9.04□□□□□ -0.96
USP54-202ENST00000413442 RBM6P78332 1123 aaKnown RBP9.04□□□□□ -0.96
USP54-202ENST00000413442 SRPK2P78362 688 aaKnown RBP9.04□□□□□ -0.96
USP54-202ENST00000413442 NBPF8Q3BBV2 869 aa9.04□□□□□ -0.96
USP54-202ENST00000413442 DDX17Q92841 729 aaKnown RBP9.04□□□□□ -0.96
USP54-202ENST00000413442 HIRIP3Q9BW71 556 aaPredicted RBP9.04□□□□□ -0.96
USP54-202ENST00000413442 TRPC5Q9UL62 973 aaPredicted RBP9.04□□□□□ -0.96
USP54-202ENST00000413442 MARF1Q9Y4F3 1742 aaKnown RBP9.04□□□□□ -0.96
USP54-202ENST00000413442 USP32Q8NFA0 1604 aa9.04□□□□□ -0.96
USP54-202ENST00000413442 TNS3Q68CZ2 1445 aa9.04□□□□□ -0.96
USP54-202ENST00000413442 ATAD2Q6PL18 1390 aa9.03□□□□□ -0.96
USP54-202ENST00000413442 HAP1P54257 671 aaPredicted RBP9.03□□□□□ -0.96
USP54-202ENST00000413442 CDCA8Q53HL2 280 aa9.03□□□□□ -0.96
USP54-202ENST00000413442 PMFBP1Q8TBY8 1022 aa9.03□□□□□ -0.96
USP54-202ENST00000413442 QTRT2Q9H974 415 aaKnown RBP9.03□□□□□ -0.96
USP54-202ENST00000413442 PRR36Q9H6K5 1346 aa9.03□□□□□ -0.96
USP54-202ENST00000413442 RALGAPBQ86X10 1494 aa9.02□□□□□ -0.96
USP54-202ENST00000413442 QRICH2Q9H0J4 1663 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 POTEAQ6S8J7 498 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 NLRP13Q86W25 1043 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 C8orf37Q96NL8 207 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 PCGF6Q9BYE7 350 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 ACEP12821 1306 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 AFF2P51816 1311 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms