RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RUNDC1Q96C34 613 aa17.28■□□□□ 0.36
VPS54-203ENST00000409558 RTN4Q9NQC3 1192 aaKnown RBP17.28■□□□□ 0.36
VPS54-203ENST00000409558 RLBP1P12271 317 aa17.28■□□□□ 0.36
VPS54-203ENST00000409558 MADDQ8WXG6 1647 aa17.28■□□□□ 0.36
VPS54-203ENST00000409558 CENPQQ7L2Z9 268 aaPredicted RBP17.27■□□□□ 0.36
VPS54-203ENST00000409558 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.36
VPS54-203ENST00000409558 STAC3Q96MF2 364 aa17.25■□□□□ 0.35
VPS54-203ENST00000409558 ZNF518AQ6AHZ1 1483 aa17.25■□□□□ 0.35
VPS54-203ENST00000409558 SMC4Q9NTJ3 1288 aa17.25■□□□□ 0.35
VPS54-203ENST00000409558 ZRANB1Q9UGI0 708 aa17.25■□□□□ 0.35
VPS54-203ENST00000409558 YEATS2Q9ULM3 1422 aa17.25■□□□□ 0.35
VPS54-203ENST00000409558 TXNDC2Q86VQ3 553 aa17.24■□□□□ 0.35
VPS54-203ENST00000409558 ZNF521Q96K83 1311 aa17.24■□□□□ 0.35
VPS54-203ENST00000409558 EXOSC9Q06265 439 aaKnown RBP17.24■□□□□ 0.35
VPS54-203ENST00000409558 CDK19Q9BWU1 502 aa17.24■□□□□ 0.35
VPS54-203ENST00000409558 ZMYM4Q5VZL5 1548 aa17.23■□□□□ 0.35
VPS54-203ENST00000409558 ITPRIPQ8IWB1 547 aa17.23■□□□□ 0.35
VPS54-203ENST00000409558 SLKQ9H2G2 1235 aaPredicted RBP17.22■□□□□ 0.35
VPS54-203ENST00000409558 RIPK4P57078 832 aa17.22■□□□□ 0.35
VPS54-203ENST00000409558 SPHKAPQ2M3C7 1700 aa17.22■□□□□ 0.35
VPS54-203ENST00000409558 SLC24A1O60721 1099 aa17.22■□□□□ 0.35
VPS54-203ENST00000409558 RARSP54136 660 aaKnown RBP17.21■□□□□ 0.35
VPS54-203ENST00000409558 FAM161AQ3B820 660 aa17.2■□□□□ 0.34
VPS54-203ENST00000409558 SEC24BO95487 1268 aa17.2■□□□□ 0.34
VPS54-203ENST00000409558 PCDHB15Q9Y5E8 787 aa17.2■□□□□ 0.34
VPS54-203ENST00000409558 MS4A1P11836 297 aa17.19■□□□□ 0.34
VPS54-203ENST00000409558 RRS1Q15050 365 aaKnown RBP17.19■□□□□ 0.34
VPS54-203ENST00000409558 NKTRP30414 1462 aaKnown RBP17.19■□□□□ 0.34
VPS54-203ENST00000409558 HDGFL2Q7Z4V5 671 aaPredicted RBP17.19■□□□□ 0.34
VPS54-203ENST00000409558 FYB1O15117 783 aa17.18■□□□□ 0.34
VPS54-203ENST00000409558 TERF2IPQ9NYB0 399 aa17.18■□□□□ 0.34
VPS54-203ENST00000409558 PIK3C2GO75747 1445 aa17.18■□□□□ 0.34
VPS54-203ENST00000409558 ABCA6Q8N139 1617 aa17.17■□□□□ 0.34
VPS54-203ENST00000409558 POGZQ7Z3K3 1410 aa17.17■□□□□ 0.34
VPS54-203ENST00000409558 KDM2BQ8NHM5 1336 aa17.17■□□□□ 0.34
VPS54-203ENST00000409558 CEP152O94986 1710 aa17.17■□□□□ 0.34
VPS54-203ENST00000409558 EMILIN1Q9Y6C2 1016 aa17.17■□□□□ 0.34
VPS54-203ENST00000409558 C8orf34Q49A92 452 aa17.16■□□□□ 0.34
VPS54-203ENST00000409558 A0A1W2PP64 1363 aa17.16■□□□□ 0.34
VPS54-203ENST00000409558 C1orf115Q9H7X2 142 aa17.16■□□□□ 0.34
VPS54-203ENST00000409558 TET3O43151 1660 aa17.16■□□□□ 0.34
VPS54-203ENST00000409558 PRKAR2BP31323 418 aa17.15■□□□□ 0.34
VPS54-203ENST00000409558 DCTN1Q14203 1278 aa17.15■□□□□ 0.34
VPS54-203ENST00000409558 PPRC1Q5VV67 1664 aaKnown RBP17.15■□□□□ 0.34
VPS54-203ENST00000409558 DIAPH1O60610 1272 aaKnown RBP17.15■□□□□ 0.34
VPS54-203ENST00000409558 NME9Q86XW9 330 aa17.15■□□□□ 0.34
VPS54-203ENST00000409558 MYH16Q9H6N6 1097 aa17.14■□□□□ 0.33
VPS54-203ENST00000409558 TMPOP42166 694 aaKnown RBP17.14■□□□□ 0.33
VPS54-203ENST00000409558 CEBPAP49715 358 aaPredicted RBP17.13■□□□□ 0.33
VPS54-203ENST00000409558 KIDINS220Q9ULH0 1771 aa17.13■□□□□ 0.33
VPS54-203ENST00000409558 EFCAB6Q5THR3 1501 aa17.13■□□□□ 0.33
VPS54-203ENST00000409558 APBB1O00213 710 aa17.13■□□□□ 0.33
VPS54-203ENST00000409558 SSH1Q8WYL5 1049 aa17.13■□□□□ 0.33
VPS54-203ENST00000409558 PDZRN3Q9UPQ7 1066 aa17.13■□□□□ 0.33
VPS54-203ENST00000409558 RNF17Q9BXT8 1623 aaKnown RBP17.13■□□□□ 0.33
VPS54-203ENST00000409558 MAP3K4Q9Y6R4 1608 aa17.13■□□□□ 0.33
VPS54-203ENST00000409558 TRMT2AQ8IZ69 625 aaKnown RBP17.12■□□□□ 0.33
VPS54-203ENST00000409558 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
VPS54-203ENST00000409558 SLC52A1Q9NWF4 448 aa17.12■□□□□ 0.33
VPS54-203ENST00000409558 INO80Q9ULG1 1556 aaPredicted RBP17.11■□□□□ 0.33
VPS54-203ENST00000409558 ZBTB7CA1YPR0 619 aa17.11■□□□□ 0.33
VPS54-203ENST00000409558 KDM5AP29375 1690 aaKnown RBP17.11■□□□□ 0.33
VPS54-203ENST00000409558 SYNMO15061 1565 aa17.11■□□□□ 0.33
VPS54-203ENST00000409558 MROH2AA6NES4 1674 aa17.11■□□□□ 0.33
VPS54-203ENST00000409558 SLC26A8Q96RN1 970 aa17.11■□□□□ 0.33
VPS54-203ENST00000409558 DDRGK1Q96HY6 314 aa17.11■□□□□ 0.33
VPS54-203ENST00000409558 FAM83GA6ND36 823 aa17.1■□□□□ 0.33
VPS54-203ENST00000409558 MFAP1P55081 439 aaKnown RBP17.1■□□□□ 0.33
VPS54-203ENST00000409558 IQGAP1P46940 1657 aa17.1■□□□□ 0.33
VPS54-203ENST00000409558 DZIP1LQ8IYY4 767 aaKnown RBP17.1■□□□□ 0.33
VPS54-203ENST00000409558 RPGRIP1LQ68CZ1 1315 aa17.1■□□□□ 0.33
VPS54-203ENST00000409558 ZKSCAN2Q63HK3 967 aa17.1■□□□□ 0.33
VPS54-203ENST00000409558 ABCA9Q8IUA7 1624 aa17.1■□□□□ 0.33
VPS54-203ENST00000409558 POLR3AO14802 1390 aaPredicted RBP17.1■□□□□ 0.33
VPS54-203ENST00000409558 RBM33Q96EV2 1170 aaKnown RBP17.1■□□□□ 0.33
VPS54-203ENST00000409558 PHACTR3Q96KR7 559 aa17.1■□□□□ 0.33
VPS54-203ENST00000409558 NUTM2GQ5VZR2 741 aa17.09■□□□□ 0.33
VPS54-203ENST00000409558 MROH1Q8NDA8 1641 aa17.09■□□□□ 0.33
VPS54-203ENST00000409558 KIF1BO60333 1816 aa17.09■□□□□ 0.33
VPS54-203ENST00000409558 C14orf37Q86TY3 774 aa17.08■□□□□ 0.33
VPS54-203ENST00000409558 FRAT2O75474 233 aaPredicted RBP17.07■□□□□ 0.32
VPS54-203ENST00000409558 TRIM27P14373 513 aa17.07■□□□□ 0.32
VPS54-203ENST00000409558 PDE3AQ14432 1141 aa17.07■□□□□ 0.32
VPS54-203ENST00000409558 PMFBP1Q8TBY8 1022 aa17.07■□□□□ 0.32
VPS54-203ENST00000409558 LNPKQ9C0E8 428 aa17.07■□□□□ 0.32
VPS54-203ENST00000409558 NFKBIBQ15653 356 aa17.07■□□□□ 0.32
VPS54-203ENST00000409558 ANKRD36BQ8N2N9 1353 aa17.07■□□□□ 0.32
VPS54-203ENST00000409558 TMEM57Q8N5G2 664 aa17.06■□□□□ 0.32
VPS54-203ENST00000409558 NPC1L1Q9UHC9 1359 aa17.06■□□□□ 0.32
VPS54-203ENST00000409558 TRIM35Q9UPQ4 493 aa17.06■□□□□ 0.32
VPS54-203ENST00000409558 MYOM2P54296 1465 aa17.05■□□□□ 0.32
VPS54-203ENST00000409558 LAMC1P11047 1609 aa17.05■□□□□ 0.32
VPS54-203ENST00000409558 WDR63Q8IWG1 891 aa17.05■□□□□ 0.32
VPS54-203ENST00000409558 INSRP06213 1382 aa17.04■□□□□ 0.32
VPS54-203ENST00000409558 TSPYL6Q8N831 410 aa17.04■□□□□ 0.32
VPS54-203ENST00000409558 RWDD1Q9H446 243 aaPredicted RBP17.04■□□□□ 0.32
VPS54-203ENST00000409558 IL27Q8NEV9 243 aa17.04■□□□□ 0.32
VPS54-203ENST00000409558 MIS18AQ9NYP9 233 aa17.04■□□□□ 0.32
VPS54-203ENST00000409558 ABCC3O15438 1527 aa17.04■□□□□ 0.32
VPS54-203ENST00000409558 KRT24Q2M2I5 525 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms