RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 GLI2P10070 1586 aa14.64□□□□□ -0.07
TCOF1-203ENST00000394269 CFAP53Q96M91 514 aa14.63□□□□□ -0.07
TCOF1-203ENST00000394269 SPINK5Q9NQ38 1064 aaPredicted RBP14.63□□□□□ -0.07
TCOF1-203ENST00000394269 TERF2IPQ9NYB0 399 aa14.63□□□□□ -0.07
TCOF1-203ENST00000394269 SLC26A8Q96RN1 970 aa14.62□□□□□ -0.07
TCOF1-203ENST00000394269 NCKAP5LQ9HCH0 1330 aa14.62□□□□□ -0.07
TCOF1-203ENST00000394269 KDM5AP29375 1690 aaKnown RBP14.62□□□□□ -0.07
TCOF1-203ENST00000394269 SBNO2Q9Y2G9 1366 aa14.62□□□□□ -0.07
TCOF1-203ENST00000394269 HDGFL2Q7Z4V5 671 aaPredicted RBP14.62□□□□□ -0.07
TCOF1-203ENST00000394269 PPP6R1Q9UPN7 881 aa14.62□□□□□ -0.07
TCOF1-203ENST00000394269 DMRT2Q9Y5R5 561 aa14.62□□□□□ -0.07
TCOF1-203ENST00000394269 C20orf194Q5TEA3 1177 aa14.61□□□□□ -0.07
TCOF1-203ENST00000394269 ADGRB1O14514 1584 aa14.61□□□□□ -0.07
TCOF1-203ENST00000394269 YTHDC2Q9H6S0 1430 aaKnown RBP14.61□□□□□ -0.07
TCOF1-203ENST00000394269 NEXMIFQ5QGS0 1516 aa14.6□□□□□ -0.07
TCOF1-203ENST00000394269 CRBNQ96SW2 442 aa14.6□□□□□ -0.07
TCOF1-203ENST00000394269 DUSP27Q5VZP5 1158 aa14.59□□□□□ -0.07
TCOF1-203ENST00000394269 RIMS2Q9UQ26 1411 aa14.59□□□□□ -0.07
TCOF1-203ENST00000394269 TCP11L2Q8N4U5 519 aa14.59□□□□□ -0.07
TCOF1-203ENST00000394269 PIK3C2BO00750 1634 aa14.59□□□□□ -0.07
TCOF1-203ENST00000394269 RNF123Q5XPI4 1314 aa14.59□□□□□ -0.07
TCOF1-203ENST00000394269 BLMP54132 1417 aaPredicted RBP14.58□□□□□ -0.08
TCOF1-203ENST00000394269 FYB1O15117 783 aa14.58□□□□□ -0.08
TCOF1-203ENST00000394269 HDGFP51858 240 aaKnown RBP14.58□□□□□ -0.08
TCOF1-203ENST00000394269 PPLO60437 1756 aa14.58□□□□□ -0.08
TCOF1-203ENST00000394269 A0A1W2PP64 1363 aa14.58□□□□□ -0.08
TCOF1-203ENST00000394269 NPC1L1Q9UHC9 1359 aa14.58□□□□□ -0.08
TCOF1-203ENST00000394269 SOX12O15370 315 aa14.58□□□□□ -0.08
TCOF1-203ENST00000394269 KIAA1210Q9ULL0 1709 aa14.57□□□□□ -0.08
TCOF1-203ENST00000394269 NEURL4Q96JN8 1562 aa14.57□□□□□ -0.08
TCOF1-203ENST00000394269 CANXP27824 592 aaKnown RBP14.57□□□□□ -0.08
TCOF1-203ENST00000394269 SKAP1Q86WV1 359 aa14.57□□□□□ -0.08
TCOF1-203ENST00000394269 ANKRD36BQ8N2N9 1353 aa14.56□□□□□ -0.08
TCOF1-203ENST00000394269 BCAR3O75815 825 aa14.56□□□□□ -0.08
TCOF1-203ENST00000394269 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.56□□□□□ -0.08
TCOF1-203ENST00000394269 SLFN5Q08AF3 891 aa14.56□□□□□ -0.08
TCOF1-203ENST00000394269 FRAT1Q92837 279 aaPredicted RBP14.56□□□□□ -0.08
TCOF1-203ENST00000394269 BCL2L13Q9BXK5 485 aa14.55□□□□□ -0.08
TCOF1-203ENST00000394269 METP08581 1390 aa14.55□□□□□ -0.08
TCOF1-203ENST00000394269 SETBP1Q9Y6X0 1596 aa14.55□□□□□ -0.08
TCOF1-203ENST00000394269 WWC1Q8IX03 1113 aa14.55□□□□□ -0.08
TCOF1-203ENST00000394269 IFT172Q9UG01 1749 aa14.55□□□□□ -0.08
TCOF1-203ENST00000394269 RUNDC1Q96C34 613 aa14.54□□□□□ -0.08
TCOF1-203ENST00000394269 ZRANB1Q9UGI0 708 aa14.54□□□□□ -0.08
TCOF1-203ENST00000394269 TNRQ92752 1358 aa14.54□□□□□ -0.08
TCOF1-203ENST00000394269 LTKP29376 864 aa14.54□□□□□ -0.08
TCOF1-203ENST00000394269 PREX1Q8TCU6 1659 aa14.54□□□□□ -0.08
TCOF1-203ENST00000394269 A2ML1A8K2U0 1454 aa14.54□□□□□ -0.08
TCOF1-203ENST00000394269 MYOM1P52179 1685 aa14.53□□□□□ -0.08
TCOF1-203ENST00000394269 CLTCQ00610 1675 aaKnown RBP14.53□□□□□ -0.08
TCOF1-203ENST00000394269 QRICH2Q9H0J4 1663 aa14.53□□□□□ -0.08
TCOF1-203ENST00000394269 MYT1Q01538 1121 aa14.53□□□□□ -0.08
TCOF1-203ENST00000394269 ZMYM4Q5VZL5 1548 aa14.53□□□□□ -0.08
TCOF1-203ENST00000394269 ATAD2Q6PL18 1390 aa14.53□□□□□ -0.08
TCOF1-203ENST00000394269 MYO5BQ9ULV0 1848 aa14.53□□□□□ -0.08
TCOF1-203ENST00000394269 TULP4Q9NRJ4 1543 aa14.53□□□□□ -0.08
TCOF1-203ENST00000394269 ZFYVE9O95405 1425 aa14.52□□□□□ -0.08
TCOF1-203ENST00000394269 E9PSI1 815 aa14.52□□□□□ -0.09
TCOF1-203ENST00000394269 TMEM131LA2VDJ0 1609 aa14.52□□□□□ -0.09
TCOF1-203ENST00000394269 WASLO00401 505 aaPredicted RBP14.51□□□□□ -0.09
TCOF1-203ENST00000394269 NME9Q86XW9 330 aa14.51□□□□□ -0.09
TCOF1-203ENST00000394269 NUDT16Q96DE0 195 aaKnown RBP14.51□□□□□ -0.09
TCOF1-203ENST00000394269 RBM33Q96EV2 1170 aaKnown RBP14.51□□□□□ -0.09
TCOF1-203ENST00000394269 EID1Q9Y6B2 187 aa14.51□□□□□ -0.09
TCOF1-203ENST00000394269 POLR3AO14802 1390 aaPredicted RBP14.51□□□□□ -0.09
TCOF1-203ENST00000394269 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.5□□□□□ -0.09
TCOF1-203ENST00000394269 ZNF521Q96K83 1311 aa14.5□□□□□ -0.09
TCOF1-203ENST00000394269 MAPK8IP3Q9UPT6 1336 aa14.5□□□□□ -0.09
TCOF1-203ENST00000394269 HMOX1P09601 288 aa14.5□□□□□ -0.09
TCOF1-203ENST00000394269 PUS7Q96PZ0 661 aaKnown RBP14.5□□□□□ -0.09
TCOF1-203ENST00000394269 LAS1LQ9Y4W2 734 aaKnown RBP14.5□□□□□ -0.09
TCOF1-203ENST00000394269 ALKQ9UM73 1620 aa14.49□□□□□ -0.09
TCOF1-203ENST00000394269 DIAPH1O60610 1272 aaKnown RBP14.48□□□□□ -0.09
TCOF1-203ENST00000394269 RRS1Q15050 365 aaKnown RBP14.48□□□□□ -0.09
TCOF1-203ENST00000394269 NPM2Q86SE8 214 aaKnown RBP14.48□□□□□ -0.09
TCOF1-203ENST00000394269 PTPRMP28827 1452 aa14.48□□□□□ -0.09
TCOF1-203ENST00000394269 ZC3H13Q5T200 1668 aaKnown RBP14.48□□□□□ -0.09
TCOF1-203ENST00000394269 CLUAP1Q96AJ1 413 aa14.48□□□□□ -0.09
TCOF1-203ENST00000394269 PMFBP1Q8TBY8 1022 aa14.48□□□□□ -0.09
TCOF1-203ENST00000394269 TSR2Q969E8 191 aaKnown RBP14.48□□□□□ -0.09
TCOF1-203ENST00000394269 EMILIN1Q9Y6C2 1016 aa14.48□□□□□ -0.09
TCOF1-203ENST00000394269 CCDC61Q9Y6R9 512 aa14.47□□□□□ -0.09
TCOF1-203ENST00000394269 AGLP35573 1532 aa14.47□□□□□ -0.09
TCOF1-203ENST00000394269 NEFMP07197 916 aa14.46□□□□□ -0.1
TCOF1-203ENST00000394269 PANK1Q8TE04 598 aa14.46□□□□□ -0.1
TCOF1-203ENST00000394269 ABCC11Q96J66 1382 aa14.45□□□□□ -0.1
TCOF1-203ENST00000394269 RIPK4P57078 832 aa14.45□□□□□ -0.1
TCOF1-203ENST00000394269 ANP32EQ9BTT0 268 aa14.45□□□□□ -0.1
TCOF1-203ENST00000394269 TMEM2Q9UHN6 1383 aa14.45□□□□□ -0.1
TCOF1-203ENST00000394269 AMOTL2Q9Y2J4 779 aa14.45□□□□□ -0.1
TCOF1-203ENST00000394269 COG6Q9Y2V7 657 aa14.45□□□□□ -0.1
TCOF1-203ENST00000394269 INSRP06213 1382 aa14.44□□□□□ -0.1
TCOF1-203ENST00000394269 ERICH6Q7L0X2 663 aa14.44□□□□□ -0.1
TCOF1-203ENST00000394269 COG3Q96JB2 828 aa14.44□□□□□ -0.1
TCOF1-203ENST00000394269 POLKQ9UBT6 870 aa14.44□□□□□ -0.1
TCOF1-203ENST00000394269 MYO3AQ8NEV4 1616 aa14.43□□□□□ -0.1
TCOF1-203ENST00000394269 ARHGEF28Q8N1W1 1705 aaKnown RBP14.43□□□□□ -0.1
TCOF1-203ENST00000394269 AEBP2Q6ZN18 517 aaPredicted RBP14.43□□□□□ -0.1
TCOF1-203ENST00000394269 PPIP5K1Q6PFW1 1433 aa14.43□□□□□ -0.1
TCOF1-203ENST00000394269 PRKAR2BP31323 418 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms