RNA–Protein interactions for RNA: ENST00000338468.7

PRKN-201, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 1,276 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-201ENST00000338468 UPF1Q92900 1129 aaKnown RBP eCLIP22.29■■□□□ 1.16
PRKN-201ENST00000338468 STK26Q9P289 416 aa22.29■■□□□ 1.16
PRKN-201ENST00000338468 YTHDC2Q9H6S0 1430 aaKnown RBP22.29■■□□□ 1.16
PRKN-201ENST00000338468 KDM2AQ9Y2K7 1162 aa22.28■■□□□ 1.16
PRKN-201ENST00000338468 BRINP3Q76B58 766 aa22.26■■□□□ 1.15
PRKN-201ENST00000338468 PLEKHH1Q9ULM0 1364 aa22.25■■□□□ 1.15
PRKN-201ENST00000338468 ADGRB1O14514 1584 aa22.25■■□□□ 1.15
PRKN-201ENST00000338468 RXRBP28702 533 aa22.25■■□□□ 1.15
PRKN-201ENST00000338468 WAPLQ7Z5K2 1190 aa22.25■■□□□ 1.15
PRKN-201ENST00000338468 CDK12Q9NYV4 1490 aaPredicted RBP22.24■■□□□ 1.15
PRKN-201ENST00000338468 STAC3Q96MF2 364 aa22.24■■□□□ 1.15
PRKN-201ENST00000338468 NUTM2BA6NNL0 878 aaPredicted RBP22.23■■□□□ 1.15
PRKN-201ENST00000338468 NUTM2EB1AL46 878 aaPredicted RBP22.23■■□□□ 1.15
PRKN-201ENST00000338468 NUTM2AQ8IVF1 878 aaPredicted RBP22.23■■□□□ 1.15
PRKN-201ENST00000338468 SIRT1Q96EB6 747 aa22.21■■□□□ 1.15
PRKN-201ENST00000338468 SIN3AQ96ST3 1273 aa22.2■■□□□ 1.14
PRKN-201ENST00000338468 C1orf167Q5SNV9 1468 aa22.2■■□□□ 1.14
PRKN-201ENST00000338468 CDC42BPGQ6DT37 1551 aa22.2■■□□□ 1.14
PRKN-201ENST00000338468 NHSL1Q5SYE7 1610 aa22.2■■□□□ 1.14
PRKN-201ENST00000338468 AFF2P51816 1311 aa22.19■■□□□ 1.14
PRKN-201ENST00000338468 DLC1Q96QB1 1528 aa22.17■■□□□ 1.14
PRKN-201ENST00000338468 LRRC59Q96AG4 307 aaKnown RBP22.14■■□□□ 1.13
PRKN-201ENST00000338468 L3MBTL2Q969R5 705 aa22.13■■□□□ 1.13
PRKN-201ENST00000338468 PRAM1Q96QH2 718 aa22.13■■□□□ 1.13
PRKN-201ENST00000338468 ORAI2Q96SN7 254 aa22.13■■□□□ 1.13
PRKN-201ENST00000338468 DDX17Q92841 729 aaKnown RBP22.12■■□□□ 1.13
PRKN-201ENST00000338468 TRAK1Q9UPV9 953 aa22.12■■□□□ 1.13
PRKN-201ENST00000338468 KIAA1210Q9ULL0 1709 aa22.11■■□□□ 1.13
PRKN-201ENST00000338468 C8orf37Q96NL8 207 aa22.11■■□□□ 1.13
PRKN-201ENST00000338468 RGS12O14924 1447 aa22.11■■□□□ 1.13
PRKN-201ENST00000338468 FMN2Q9NZ56 1722 aa22.11■■□□□ 1.13
PRKN-201ENST00000338468 PNPLA6Q8IY17 1366 aa22.11■■□□□ 1.13
PRKN-201ENST00000338468 NEUROD1Q13562 356 aa22.1■■□□□ 1.13
PRKN-201ENST00000338468 SAFB2Q14151 953 aaKnown RBP eCLIP22.09■■□□□ 1.13
PRKN-201ENST00000338468 RBM6P78332 1123 aaKnown RBP22.08■■□□□ 1.13
PRKN-201ENST00000338468 NBPF1Q3BBV0 1214 aa22.07■■□□□ 1.12
PRKN-201ENST00000338468 QTRT2Q9H974 415 aaKnown RBP22.07■■□□□ 1.12
PRKN-201ENST00000338468 POGKQ9P215 609 aa22.07■■□□□ 1.12
PRKN-201ENST00000338468 ARHGEF28Q8N1W1 1705 aaKnown RBP22.06■■□□□ 1.12
PRKN-201ENST00000338468 NUTM2FA1L443 756 aa22.06■■□□□ 1.12
PRKN-201ENST00000338468 ADGRB2O60241 1585 aa22.06■■□□□ 1.12
PRKN-201ENST00000338468 ESCO1Q5FWF5 840 aa22.04■■□□□ 1.12
PRKN-201ENST00000338468 SOS2Q07890 1332 aaPredicted RBP22.03■■□□□ 1.12
PRKN-201ENST00000338468 NGLY1Q96IV0 654 aa22.02■■□□□ 1.12
PRKN-201ENST00000338468 ADAMTS2O95450 1211 aa22.01■■□□□ 1.11
PRKN-201ENST00000338468 RGPD8O14715 1765 aaPredicted RBP22.01■■□□□ 1.11
PRKN-201ENST00000338468 USP32Q8NFA0 1604 aa22.01■■□□□ 1.11
PRKN-201ENST00000338468 MINK1Q8N4C8 1332 aaPredicted RBP22.01■■□□□ 1.11
PRKN-201ENST00000338468 TRPM1Q7Z4N2 1603 aa22■■□□□ 1.11
PRKN-201ENST00000338468 HIRIP3Q9BW71 556 aaPredicted RBP22■■□□□ 1.11
PRKN-201ENST00000338468 SRCAPQ6ZRS2 3230 aa22■■□□□ 1.11
PRKN-201ENST00000338468 ATAD2Q6PL18 1390 aa21.99■■□□□ 1.11
PRKN-201ENST00000338468 PXDNQ92626 1479 aa21.99■■□□□ 1.11
PRKN-201ENST00000338468 FOXO3O43524 673 aa21.98■■□□□ 1.11
PRKN-201ENST00000338468 NPHP3Q7Z494 1330 aa21.97■■□□□ 1.11
PRKN-201ENST00000338468 KIF1AQ12756 1690 aa21.97■■□□□ 1.11
PRKN-201ENST00000338468 ANKARQ7Z5J8 1434 aa21.97■■□□□ 1.11
PRKN-201ENST00000338468 NBPF8Q3BBV2 869 aa21.96■■□□□ 1.11
PRKN-201ENST00000338468 WASLO00401 505 aaPredicted RBP21.95■■□□□ 1.1
PRKN-201ENST00000338468 PCGF6Q9BYE7 350 aa21.95■■□□□ 1.1
PRKN-201ENST00000338468 PRR36Q9H6K5 1346 aa21.95■■□□□ 1.1
PRKN-201ENST00000338468 XPCQ01831 940 aaPredicted RBP21.94■■□□□ 1.1
PRKN-201ENST00000338468 USP21Q9UK80 565 aa21.94■■□□□ 1.1
PRKN-201ENST00000338468 TULP4Q9NRJ4 1543 aa21.94■■□□□ 1.1
PRKN-201ENST00000338468 TRPC5Q9UL62 973 aaPredicted RBP21.93■■□□□ 1.1
PRKN-201ENST00000338468 PHF8Q9UPP1 1060 aa21.93■■□□□ 1.1
PRKN-201ENST00000338468 COL22A1Q8NFW1 1626 aaPredicted RBP21.91■■□□□ 1.1
PRKN-201ENST00000338468 TONSLQ96HA7 1378 aa21.9■■□□□ 1.1
PRKN-201ENST00000338468 EIF3AQ14152 1382 aaKnown RBP21.89■■□□□ 1.1
PRKN-201ENST00000338468 FNBP4Q8N3X1 1017 aaPredicted RBP21.89■■□□□ 1.09
PRKN-201ENST00000338468 ATRNO75882 1429 aa21.89■■□□□ 1.09
PRKN-201ENST00000338468 ROCK2O75116 1388 aaKnown RBP21.88■■□□□ 1.09
PRKN-201ENST00000338468 GPRASP1Q5JY77 1395 aa21.88■■□□□ 1.09
PRKN-201ENST00000338468 ATP7BP35670 1465 aa21.88■■□□□ 1.09
PRKN-201ENST00000338468 CENPJQ9HC77 1338 aaPredicted RBP21.87■■□□□ 1.09
PRKN-201ENST00000338468 KRT28Q7Z3Y7 464 aa21.87■■□□□ 1.09
PRKN-201ENST00000338468 PMFBP1Q8TBY8 1022 aa21.87■■□□□ 1.09
PRKN-201ENST00000338468 EP400Q96L91 3159 aa21.87■■□□□ 1.09
PRKN-201ENST00000338468 QRICH2Q9H0J4 1663 aa21.86■■□□□ 1.09
PRKN-201ENST00000338468 CDK19Q9BWU1 502 aa21.86■■□□□ 1.09
PRKN-201ENST00000338468 SPATA31A3Q5VYP0 1347 aa21.85■■□□□ 1.09
PRKN-201ENST00000338468 ZRANB1Q9UGI0 708 aa21.85■■□□□ 1.09
PRKN-201ENST00000338468 NUDT16Q96DE0 195 aaKnown RBP21.84■■□□□ 1.09
PRKN-201ENST00000338468 RALGAPBQ86X10 1494 aa21.83■■□□□ 1.09
PRKN-201ENST00000338468 TOPAZ1Q8N9V7 1692 aa21.82■■□□□ 1.08
PRKN-201ENST00000338468 TNS3Q68CZ2 1445 aa21.81■■□□□ 1.08
PRKN-201ENST00000338468 ITSN1Q15811 1721 aa21.81■■□□□ 1.08
PRKN-201ENST00000338468 TRPM3Q9HCF6 1732 aaPredicted RBP21.81■■□□□ 1.08
PRKN-201ENST00000338468 SBNO1A3KN83 1393 aa21.81■■□□□ 1.08
PRKN-201ENST00000338468 MARF1Q9Y4F3 1742 aaKnown RBP21.8■■□□□ 1.08
PRKN-201ENST00000338468 BCL9LQ86UU0 1499 aa21.8■■□□□ 1.08
PRKN-201ENST00000338468 PSME1Q06323 249 aa21.8■■□□□ 1.08
PRKN-201ENST00000338468 CCDC125Q86Z20 511 aa21.8■■□□□ 1.08
PRKN-201ENST00000338468 CARD11Q9BXL7 1154 aa21.77■■□□□ 1.08
PRKN-201ENST00000338468 CCDC61Q9Y6R9 512 aa21.77■■□□□ 1.08
PRKN-201ENST00000338468 CLSPNQ9HAW4 1339 aa21.77■■□□□ 1.07
PRKN-201ENST00000338468 NGDNQ8NEJ9 315 aaKnown RBP21.76■■□□□ 1.07
PRKN-201ENST00000338468 CABP2Q9NPB3 220 aa21.76■■□□□ 1.07
PRKN-201ENST00000338468 ALS2Q96Q42 1657 aa21.75■■□□□ 1.07
PRKN-201ENST00000338468 POLR3AO14802 1390 aaPredicted RBP21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms