RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DCAF11Q8TEB1 546 aa23.85■■□□□ 1.41
LSM1-201ENST00000311351 KDM2AQ9Y2K7 1162 aa23.85■■□□□ 1.41
LSM1-201ENST00000311351 DDX17Q92841 729 aaKnown RBP23.84■■□□□ 1.41
LSM1-201ENST00000311351 FMN2Q9NZ56 1722 aa23.81■■□□□ 1.4
LSM1-201ENST00000311351 LRP6O75581 1613 aa23.81■■□□□ 1.4
LSM1-201ENST00000311351 ORAI2Q96SN7 254 aa23.8■■□□□ 1.4
LSM1-201ENST00000311351 DLC1Q96QB1 1528 aa23.79■■□□□ 1.4
LSM1-201ENST00000311351 POTEDQ86YR6 584 aa23.78■■□□□ 1.4
LSM1-201ENST00000311351 RGS17Q9UGC6 210 aaPredicted RBP23.77■■□□□ 1.4
LSM1-201ENST00000311351 NUTM2FA1L443 756 aa23.75■■□□□ 1.39
LSM1-201ENST00000311351 SPATA31A6Q5VVP1 1343 aa23.75■■□□□ 1.39
LSM1-201ENST00000311351 SAFB2Q14151 953 aaKnown RBP eCLIP23.74■■□□□ 1.39
LSM1-201ENST00000311351 SIRT1Q96EB6 747 aa23.74■■□□□ 1.39
LSM1-201ENST00000311351 PRAM1Q96QH2 718 aa23.74■■□□□ 1.39
LSM1-201ENST00000311351 RGPD8O14715 1765 aaPredicted RBP23.73■■□□□ 1.39
LSM1-201ENST00000311351 SOCS7O14512 581 aa23.73■■□□□ 1.39
LSM1-201ENST00000311351 ARHGEF28Q8N1W1 1705 aaKnown RBP23.73■■□□□ 1.39
LSM1-201ENST00000311351 STAC3Q96MF2 364 aa23.72■■□□□ 1.39
LSM1-201ENST00000311351 PNPLA6Q8IY17 1366 aa23.72■■□□□ 1.39
LSM1-201ENST00000311351 ADGRB2O60241 1585 aa23.72■■□□□ 1.39
LSM1-201ENST00000311351 KIAA1210Q9ULL0 1709 aa23.71■■□□□ 1.39
LSM1-201ENST00000311351 ESCO1Q5FWF5 840 aa23.71■■□□□ 1.39
LSM1-201ENST00000311351 TRAK1Q9UPV9 953 aa23.71■■□□□ 1.39
LSM1-201ENST00000311351 KIF1AQ12756 1690 aa23.7■■□□□ 1.38
LSM1-201ENST00000311351 SOS2Q07890 1332 aaPredicted RBP23.69■■□□□ 1.38
LSM1-201ENST00000311351 LRRC59Q96AG4 307 aaKnown RBP23.69■■□□□ 1.38
LSM1-201ENST00000311351 NUTM2BA6NNL0 878 aaPredicted RBP23.68■■□□□ 1.38
LSM1-201ENST00000311351 NUTM2EB1AL46 878 aaPredicted RBP23.68■■□□□ 1.38
LSM1-201ENST00000311351 NUTM2AQ8IVF1 878 aaPredicted RBP23.68■■□□□ 1.38
LSM1-201ENST00000311351 POGKQ9P215 609 aa23.68■■□□□ 1.38
LSM1-201ENST00000311351 PXDNQ92626 1479 aa23.68■■□□□ 1.38
LSM1-201ENST00000311351 USP32Q8NFA0 1604 aa23.67■■□□□ 1.38
LSM1-201ENST00000311351 MEX3CQ5U5Q3 659 aaKnown RBP23.67■■□□□ 1.38
LSM1-201ENST00000311351 SIN3AQ96ST3 1273 aa23.66■■□□□ 1.38
LSM1-201ENST00000311351 POTEAQ6S8J7 498 aa23.65■■□□□ 1.38
LSM1-201ENST00000311351 NPHP3Q7Z494 1330 aa23.64■■□□□ 1.38
LSM1-201ENST00000311351 XPCQ01831 940 aaPredicted RBP23.64■■□□□ 1.37
LSM1-201ENST00000311351 COL22A1Q8NFW1 1626 aaPredicted RBP23.63■■□□□ 1.37
LSM1-201ENST00000311351 FOXO3O43524 673 aa23.63■■□□□ 1.37
LSM1-201ENST00000311351 MINK1Q8N4C8 1332 aaPredicted RBP23.62■■□□□ 1.37
LSM1-201ENST00000311351 TRIM26Q12899 539 aaPredicted RBP23.62■■□□□ 1.37
LSM1-201ENST00000311351 HIRIP3Q9BW71 556 aaPredicted RBP23.62■■□□□ 1.37
LSM1-201ENST00000311351 ANKARQ7Z5J8 1434 aa23.59■■□□□ 1.37
LSM1-201ENST00000311351 NEUROD1Q13562 356 aa23.59■■□□□ 1.37
LSM1-201ENST00000311351 L3MBTL2Q969R5 705 aa23.59■■□□□ 1.37
LSM1-201ENST00000311351 NBPF1Q3BBV0 1214 aa23.58■■□□□ 1.37
LSM1-201ENST00000311351 TULP4Q9NRJ4 1543 aa23.58■■□□□ 1.36
LSM1-201ENST00000311351 TRPM1Q7Z4N2 1603 aa23.57■■□□□ 1.36
LSM1-201ENST00000311351 PHF8Q9UPP1 1060 aa23.56■■□□□ 1.36
LSM1-201ENST00000311351 PRR36Q9H6K5 1346 aa23.54■■□□□ 1.36
LSM1-201ENST00000311351 ADAMTS2O95450 1211 aa23.53■■□□□ 1.36
LSM1-201ENST00000311351 C8orf37Q96NL8 207 aa23.53■■□□□ 1.36
LSM1-201ENST00000311351 AFF2P51816 1311 aa23.53■■□□□ 1.36
LSM1-201ENST00000311351 EIF3AQ14152 1382 aaKnown RBP23.52■■□□□ 1.36
LSM1-201ENST00000311351 WASLO00401 505 aaPredicted RBP23.52■■□□□ 1.36
LSM1-201ENST00000311351 ITSN1Q15811 1721 aa23.52■■□□□ 1.36
LSM1-201ENST00000311351 MARF1Q9Y4F3 1742 aaKnown RBP23.52■■□□□ 1.36
LSM1-201ENST00000311351 ZNF772Q68DY9 489 aaPredicted RBP23.51■■□□□ 1.35
LSM1-201ENST00000311351 PMFBP1Q8TBY8 1022 aa23.51■■□□□ 1.35
LSM1-201ENST00000311351 QRICH2Q9H0J4 1663 aa23.51■■□□□ 1.35
LSM1-201ENST00000311351 ATP7BP35670 1465 aa23.5■■□□□ 1.35
LSM1-201ENST00000311351 KRT28Q7Z3Y7 464 aa23.5■■□□□ 1.35
LSM1-201ENST00000311351 TNS3Q68CZ2 1445 aa23.5■■□□□ 1.35
LSM1-201ENST00000311351 TRPM3Q9HCF6 1732 aaPredicted RBP23.49■■□□□ 1.35
LSM1-201ENST00000311351 SPATA31A3Q5VYP0 1347 aa23.49■■□□□ 1.35
LSM1-201ENST00000311351 TOPAZ1Q8N9V7 1692 aa23.48■■□□□ 1.35
LSM1-201ENST00000311351 ABCA3Q99758 1704 aa23.48■■□□□ 1.35
LSM1-201ENST00000311351 NGLY1Q96IV0 654 aa23.44■■□□□ 1.34
LSM1-201ENST00000311351 SBNO1A3KN83 1393 aa23.43■■□□□ 1.34
LSM1-201ENST00000311351 CENPJQ9HC77 1338 aaPredicted RBP23.43■■□□□ 1.34
LSM1-201ENST00000311351 PSME1Q06323 249 aa23.43■■□□□ 1.34
LSM1-201ENST00000311351 ALS2Q96Q42 1657 aa23.43■■□□□ 1.34
LSM1-201ENST00000311351 ROCK2O75116 1388 aaKnown RBP23.42■■□□□ 1.34
LSM1-201ENST00000311351 CDK19Q9BWU1 502 aa23.42■■□□□ 1.34
LSM1-201ENST00000311351 NBPF8Q3BBV2 869 aa23.41■■□□□ 1.34
LSM1-201ENST00000311351 NUDT16Q96DE0 195 aaKnown RBP23.41■■□□□ 1.34
LSM1-201ENST00000311351 PLEKHG5O94827 1062 aa23.4■■□□□ 1.34
LSM1-201ENST00000311351 GPRASP1Q5JY77 1395 aa23.4■■□□□ 1.34
LSM1-201ENST00000311351 TONSLQ96HA7 1378 aa23.4■■□□□ 1.34
LSM1-201ENST00000311351 LMOD2Q6P5Q4 547 aa23.39■■□□□ 1.33
LSM1-201ENST00000311351 ARHGEF10O15013 1369 aa23.39■■□□□ 1.33
LSM1-201ENST00000311351 RXRBP28702 533 aa23.38■■□□□ 1.33
LSM1-201ENST00000311351 CABLES1Q8TDN4 633 aa23.38■■□□□ 1.33
LSM1-201ENST00000311351 NGDNQ8NEJ9 315 aaKnown RBP23.37■■□□□ 1.33
LSM1-201ENST00000311351 USP21Q9UK80 565 aa23.37■■□□□ 1.33
LSM1-201ENST00000311351 CRYBG1Q9Y4K1 1723 aa23.36■■□□□ 1.33
LSM1-201ENST00000311351 QTRT2Q9H974 415 aaKnown RBP23.36■■□□□ 1.33
LSM1-201ENST00000311351 CDK12Q9NYV4 1490 aaPredicted RBP23.36■■□□□ 1.33
LSM1-201ENST00000311351 PLCH1Q4KWH8 1693 aa23.35■■□□□ 1.33
LSM1-201ENST00000311351 RGS12O14924 1447 aa23.35■■□□□ 1.33
LSM1-201ENST00000311351 FNBP4Q8N3X1 1017 aaPredicted RBP23.35■■□□□ 1.33
LSM1-201ENST00000311351 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.35■■□□□ 1.33
LSM1-201ENST00000311351 RALGAPBQ86X10 1494 aa23.35■■□□□ 1.33
LSM1-201ENST00000311351 BCL9LQ86UU0 1499 aa23.34■■□□□ 1.33
LSM1-201ENST00000311351 ATRNO75882 1429 aa23.33■■□□□ 1.33
LSM1-201ENST00000311351 HAP1P54257 671 aaPredicted RBP23.33■■□□□ 1.33
LSM1-201ENST00000311351 POLR3AO14802 1390 aaPredicted RBP23.32■■□□□ 1.32
LSM1-201ENST00000311351 SRPK2P78362 688 aaKnown RBP23.32■■□□□ 1.32
LSM1-201ENST00000311351 CABP2Q9NPB3 220 aa23.32■■□□□ 1.32
LSM1-201ENST00000311351 SLIT2O94813 1529 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms