RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 NBPF1Q3BBV0 1214 aa18.28■□□□□ 0.52
LSM5-201ENST00000223084 SIRT1Q96EB6 747 aa18.28■□□□□ 0.52
LSM5-201ENST00000223084 MST1RQ04912 1400 aa18.28■□□□□ 0.52
LSM5-201ENST00000223084 PRAM1Q96QH2 718 aa18.27■□□□□ 0.52
LSM5-201ENST00000223084 BRINP3Q76B58 766 aa18.25■□□□□ 0.51
LSM5-201ENST00000223084 POGKQ9P215 609 aa18.25■□□□□ 0.51
LSM5-201ENST00000223084 DLC1Q96QB1 1528 aa18.24■□□□□ 0.51
LSM5-201ENST00000223084 KIAA1210Q9ULL0 1709 aa18.23■□□□□ 0.51
LSM5-201ENST00000223084 C1orf167Q5SNV9 1468 aa18.23■□□□□ 0.51
LSM5-201ENST00000223084 TONSLQ96HA7 1378 aa18.23■□□□□ 0.51
LSM5-201ENST00000223084 NUTM2FA1L443 756 aa18.23■□□□□ 0.51
LSM5-201ENST00000223084 NBPF8Q3BBV2 869 aa18.22■□□□□ 0.51
LSM5-201ENST00000223084 ORAI2Q96SN7 254 aa18.21■□□□□ 0.51
LSM5-201ENST00000223084 CDC42BPGQ6DT37 1551 aa18.21■□□□□ 0.51
LSM5-201ENST00000223084 PHLPP1O60346 1717 aa18.2■□□□□ 0.5
LSM5-201ENST00000223084 DDX17Q92841 729 aaKnown RBP18.2■□□□□ 0.5
LSM5-201ENST00000223084 MINK1Q8N4C8 1332 aaPredicted RBP18.2■□□□□ 0.5
LSM5-201ENST00000223084 HIRIP3Q9BW71 556 aaPredicted RBP18.19■□□□□ 0.5
LSM5-201ENST00000223084 ARHGEF28Q8N1W1 1705 aaKnown RBP18.18■□□□□ 0.5
LSM5-201ENST00000223084 TRPM1Q7Z4N2 1603 aa18.17■□□□□ 0.5
LSM5-201ENST00000223084 FMN2Q9NZ56 1722 aa18.16■□□□□ 0.5
LSM5-201ENST00000223084 ESCO1Q5FWF5 840 aa18.16■□□□□ 0.5
LSM5-201ENST00000223084 AHDC1Q5TGY3 1603 aaPredicted RBP18.16■□□□□ 0.5
LSM5-201ENST00000223084 COL16A1Q07092 1604 aaPredicted RBP18.15■□□□□ 0.5
LSM5-201ENST00000223084 ROCK2O75116 1388 aaKnown RBP18.15■□□□□ 0.5
LSM5-201ENST00000223084 CCER1Q8TC90 406 aaPredicted RBP18.14■□□□□ 0.49
LSM5-201ENST00000223084 MED1Q15648 1581 aaPredicted RBP18.13■□□□□ 0.49
LSM5-201ENST00000223084 RGPD8O14715 1765 aaPredicted RBP18.13■□□□□ 0.49
LSM5-201ENST00000223084 NHSL1Q5SYE7 1610 aa18.12■□□□□ 0.49
LSM5-201ENST00000223084 CLSPNQ9HAW4 1339 aa18.12■□□□□ 0.49
LSM5-201ENST00000223084 ADGRB2O60241 1585 aa18.12■□□□□ 0.49
LSM5-201ENST00000223084 WASLO00401 505 aaPredicted RBP18.1■□□□□ 0.49
LSM5-201ENST00000223084 FOXO3O43524 673 aa18.1■□□□□ 0.49
LSM5-201ENST00000223084 JCADQ9P266 1359 aa18.09■□□□□ 0.49
LSM5-201ENST00000223084 CENPJQ9HC77 1338 aaPredicted RBP18.09■□□□□ 0.49
LSM5-201ENST00000223084 XPCQ01831 940 aaPredicted RBP18.09■□□□□ 0.49
LSM5-201ENST00000223084 GPRASP1Q5JY77 1395 aa18.08■□□□□ 0.49
LSM5-201ENST00000223084 PRR36Q9H6K5 1346 aa18.08■□□□□ 0.49
LSM5-201ENST00000223084 USP32Q8NFA0 1604 aa18.08■□□□□ 0.48
LSM5-201ENST00000223084 CDK19Q9BWU1 502 aa18.07■□□□□ 0.48
LSM5-201ENST00000223084 CARD11Q9BXL7 1154 aa18.07■□□□□ 0.48
LSM5-201ENST00000223084 PHF8Q9UPP1 1060 aa18.07■□□□□ 0.48
LSM5-201ENST00000223084 RALGAPBQ86X10 1494 aa18.07■□□□□ 0.48
LSM5-201ENST00000223084 SOS2Q07890 1332 aaPredicted RBP18.06■□□□□ 0.48
LSM5-201ENST00000223084 PMFBP1Q8TBY8 1022 aa18.06■□□□□ 0.48
LSM5-201ENST00000223084 LRRC59Q96AG4 307 aaKnown RBP18.06■□□□□ 0.48
LSM5-201ENST00000223084 ANKARQ7Z5J8 1434 aa18.06■□□□□ 0.48
LSM5-201ENST00000223084 NPHP3Q7Z494 1330 aa18.05■□□□□ 0.48
LSM5-201ENST00000223084 TULP4Q9NRJ4 1543 aa18.05■□□□□ 0.48
LSM5-201ENST00000223084 QRICH2Q9H0J4 1663 aa18.05■□□□□ 0.48
LSM5-201ENST00000223084 EIF3AQ14152 1382 aaKnown RBP18.04■□□□□ 0.48
LSM5-201ENST00000223084 PXDNQ92626 1479 aa18.03■□□□□ 0.48
LSM5-201ENST00000223084 NUDT16Q96DE0 195 aaKnown RBP18.03■□□□□ 0.48
LSM5-201ENST00000223084 KIF1AQ12756 1690 aa18.03■□□□□ 0.48
LSM5-201ENST00000223084 SHPRHQ149N8 1683 aa18.03■□□□□ 0.48
LSM5-201ENST00000223084 TIMELESSQ9UNS1 1208 aa18.02■□□□□ 0.48
LSM5-201ENST00000223084 PNPLA6Q8IY17 1366 aa18.02■□□□□ 0.47
LSM5-201ENST00000223084 NUTM2BA6NNL0 878 aaPredicted RBP18.01■□□□□ 0.47
LSM5-201ENST00000223084 NUTM2EB1AL46 878 aaPredicted RBP18.01■□□□□ 0.47
LSM5-201ENST00000223084 KRT28Q7Z3Y7 464 aa18.01■□□□□ 0.47
LSM5-201ENST00000223084 NUTM2AQ8IVF1 878 aaPredicted RBP18.01■□□□□ 0.47
LSM5-201ENST00000223084 ATP7BP35670 1465 aa18.01■□□□□ 0.47
LSM5-201ENST00000223084 SPATA31A6Q5VVP1 1343 aa18■□□□□ 0.47
LSM5-201ENST00000223084 SRPK2P78362 688 aaKnown RBP18■□□□□ 0.47
LSM5-201ENST00000223084 CABP2Q9NPB3 220 aa18■□□□□ 0.47
LSM5-201ENST00000223084 LRP6O75581 1613 aa17.99■□□□□ 0.47
LSM5-201ENST00000223084 PSME1Q06323 249 aa17.99■□□□□ 0.47
LSM5-201ENST00000223084 EVC2Q86UK5 1308 aa17.97■□□□□ 0.47
LSM5-201ENST00000223084 NGDNQ8NEJ9 315 aaKnown RBP17.96■□□□□ 0.47
LSM5-201ENST00000223084 CCDC61Q9Y6R9 512 aa17.96■□□□□ 0.47
LSM5-201ENST00000223084 SPATA31A3Q5VYP0 1347 aa17.96■□□□□ 0.46
LSM5-201ENST00000223084 ITSN1Q15811 1721 aa17.95■□□□□ 0.46
LSM5-201ENST00000223084 MEX3CQ5U5Q3 659 aaKnown RBP17.95■□□□□ 0.46
LSM5-201ENST00000223084 TOPAZ1Q8N9V7 1692 aa17.94■□□□□ 0.46
LSM5-201ENST00000223084 RGS17Q9UGC6 210 aaPredicted RBP17.94■□□□□ 0.46
LSM5-201ENST00000223084 ST20-MTHFSA0A0A6YYL1 179 aa17.93■□□□□ 0.46
LSM5-201ENST00000223084 PLEKHG5O94827 1062 aa17.93■□□□□ 0.46
LSM5-201ENST00000223084 LMOD2Q6P5Q4 547 aa17.93■□□□□ 0.46
LSM5-201ENST00000223084 PPIP5K1Q6PFW1 1433 aa17.92■□□□□ 0.46
LSM5-201ENST00000223084 PLEKHG3A1L390 1219 aa17.92■□□□□ 0.46
LSM5-201ENST00000223084 ADAMTS2O95450 1211 aa17.92■□□□□ 0.46
LSM5-201ENST00000223084 ACEP12821 1306 aa17.92■□□□□ 0.46
LSM5-201ENST00000223084 SBNO1A3KN83 1393 aa17.91■□□□□ 0.46
LSM5-201ENST00000223084 TNS3Q68CZ2 1445 aa17.91■□□□□ 0.46
LSM5-201ENST00000223084 CABP1Q9NZU7 370 aa17.91■□□□□ 0.46
LSM5-201ENST00000223084 SBNO2Q9Y2G9 1366 aa17.91■□□□□ 0.46
LSM5-201ENST00000223084 COL22A1Q8NFW1 1626 aaPredicted RBP17.9■□□□□ 0.46
LSM5-201ENST00000223084 TRPM3Q9HCF6 1732 aaPredicted RBP17.9■□□□□ 0.46
LSM5-201ENST00000223084 PAK3O75914 559 aaPredicted RBP17.9■□□□□ 0.46
LSM5-201ENST00000223084 POLR3AO14802 1390 aaPredicted RBP17.9■□□□□ 0.46
LSM5-201ENST00000223084 USP47Q96K76 1375 aa17.9■□□□□ 0.46
LSM5-201ENST00000223084 TESK2Q96S53 571 aa17.89■□□□□ 0.45
LSM5-201ENST00000223084 CABLES1Q8TDN4 633 aa17.88■□□□□ 0.45
LSM5-201ENST00000223084 C8orf37Q96NL8 207 aa17.88■□□□□ 0.45
LSM5-201ENST00000223084 POTEAQ6S8J7 498 aa17.87■□□□□ 0.45
LSM5-201ENST00000223084 ARHGEF10O15013 1369 aa17.86■□□□□ 0.45
LSM5-201ENST00000223084 AFF2P51816 1311 aa17.85■□□□□ 0.45
LSM5-201ENST00000223084 ATAD2Q6PL18 1390 aa17.85■□□□□ 0.45
LSM5-201ENST00000223084 ALS2Q96Q42 1657 aa17.85■□□□□ 0.45
LSM5-201ENST00000223084 NUTM2GQ5VZR2 741 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms