RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	RSM19	P53733	91 aa	Predicted RBP	4.14	□□□□□ -1.75
RPT3	YDR394W	YBR230W-A	Q3E762	66 aa		4.14	□□□□□ -1.75
RPT3	YDR394W	YNL042W-B	Q3E7Z2	85 aa		4.14	□□□□□ -1.75
RPT3	YDR394W	YJL127C-B	Q3E828	52 aa		4.14	□□□□□ -1.75
RPT3	YDR394W	SMP1	P38128	452 aa		4.13	□□□□□ -1.75
RPT3	YDR394W	YHL042W	P38729	150 aa		4.13	□□□□□ -1.75
RPT3	YDR394W	ECM12	O13529	151 aa		4.12	□□□□□ -1.75
RPT3	YDR394W	YAR1	P46683	200 aa		4.12	□□□□□ -1.75
RPT3	YDR394W	SHH4	Q06236	168 aa		4.12	□□□□□ -1.75
RPT3	YDR394W	YDR029W	Q12111	104 aa		4.12	□□□□□ -1.75
RPT3	YDR394W	RAD6	P06104	172 aa		4.11	□□□□□ -1.75
RPT3	YDR394W	YFR009W-A	P0C5M9	85 aa		4.11	□□□□□ -1.75
RPT3	YDR394W	YER039C-A	P0CD97	72 aa		4.09	□□□□□ -1.75
RPT3	YDR394W	BET1	P22804	142 aa		4.09	□□□□□ -1.75
RPT3	YDR394W	SPT4	P32914	102 aa	Predicted RBP	4.09	□□□□□ -1.75
RPT3	YDR394W	YSY6	P38374	65 aa		4.09	□□□□□ -1.75
RPT3	YDR394W	YGL193C	P53097	103 aa		4.09	□□□□□ -1.75
RPT3	YDR394W	YNL184C	P53876	108 aa		4.09	□□□□□ -1.75
RPT3	YDR394W	PEX22	P39718	180 aa		4.08	□□□□□ -1.76
RPT3	YDR394W	COF1	Q03048	143 aa	Known RBP	4.08	□□□□□ -1.76
RPT3	YDR394W	YDR119W-A	Q2V2P9	66 aa		4.08	□□□□□ -1.76
RPT3	YDR394W	YGR039W	P53225	103 aa		4.07	□□□□□ -1.76
RPT3	YDR394W	TDA2	P40045	126 aa		4.06	□□□□□ -1.76
RPT3	YDR394W	YLR285C-A	Q3E771	56 aa		4.06	□□□□□ -1.76
RPT3	YDR394W	YDR034C-A	P0C289	58 aa		4.05	□□□□□ -1.76
RPT3	YDR394W	YLR156W	P0CE96	114 aa		4.05	□□□□□ -1.76
RPT3	YDR394W	YLR159W	P0CE97	114 aa		4.05	□□□□□ -1.76
RPT3	YDR394W	YLR161W	P0CE98	114 aa		4.05	□□□□□ -1.76
RPT3	YDR394W	ICS3	P47034	131 aa		4.05	□□□□□ -1.76
RPT3	YDR394W	EDC1	P53080	175 aa	Predicted RBP	4.05	□□□□□ -1.76
RPT3	YDR394W	DDR2	P89113	61 aa		4.05	□□□□□ -1.76
RPT3	YDR394W	YPL038W-A	Q3E7B4	63 aa		4.05	□□□□□ -1.76
RPT3	YDR394W	COX23	P38824	151 aa		4.04	□□□□□ -1.76
RPT3	YDR394W	EDC2	P40023	145 aa	Predicted RBP	4.04	□□□□□ -1.76
RPT3	YDR394W	RPL38	P49167	78 aa	Known RBP	4.04	□□□□□ -1.76
RPT3	YDR394W	YER175W-A	Q8TGU4	54 aa		4.04	□□□□□ -1.76
RPT3	YDR394W	RPL36B	O14455	100 aa	Known RBP	4.03	□□□□□ -1.76
RPT3	YDR394W	YOR072W	Q08486	104 aa		4.03	□□□□□ -1.76
RPT3	YDR394W	YKL183C-A	Q3E765	70 aa		4.03	□□□□□ -1.76
RPT3	YDR394W	TDA8	Q6B2U8	126 aa		4.03	□□□□□ -1.76
RPT3	YDR394W	YHR213W-B	Q8TGK1	99 aa		4.03	□□□□□ -1.76
RPT3	YDR394W	YHL018W	P38744	120 aa	Predicted RBP	4.02	□□□□□ -1.77
RPT3	YDR394W	YPR195C	Q06594	109 aa		4.02	□□□□□ -1.77
RPT3	YDR394W	ATP20	Q12233	115 aa		4.02	□□□□□ -1.77
RPT3	YDR394W	RSM18	P40033	138 aa		4.01	□□□□□ -1.77
RPT3	YDR394W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
RPT3	YDR394W	YOR304C-A	O14468	76 aa		4	□□□□□ -1.77
RPT3	YDR394W	BSC4	P53841	131 aa		4	□□□□□ -1.77
RPT3	YDR394W	YHR007C-A	Q07074	71 aa		4	□□□□□ -1.77
RPT3	YDR394W	YJL133C-A	Q3E7A3	74 aa		4	□□□□□ -1.77
RPT3	YDR394W	YCR050C	P25630	102 aa		3.99	□□□□□ -1.77
RPT3	YDR394W	YGR121W-A	Q3E816	71 aa		3.99	□□□□□ -1.77
RPT3	YDR394W	TOM6	P33448	61 aa		3.98	□□□□□ -1.77
RPT3	YDR394W	ECM19	Q06011	112 aa		3.98	□□□□□ -1.77
RPT3	YDR394W	YOL014W	Q08110	124 aa		3.98	□□□□□ -1.77
RPT3	YDR394W	YBL112C	Q3E7Y4	105 aa		3.97	□□□□□ -1.77
RPT3	YDR394W	YLR162W	Q06235	118 aa		3.96	□□□□□ -1.78
RPT3	YDR394W	YEL045C	P32616	141 aa		3.95	□□□□□ -1.78
RPT3	YDR394W	SPG1	P50088	95 aa		3.95	□□□□□ -1.78
RPT3	YDR394W	YOR314W	Q12506	109 aa		3.95	□□□□□ -1.78
RPT3	YDR394W	LCL1	Q02786	101 aa		3.94	□□□□□ -1.78
RPT3	YDR394W	MIC10	Q96VH5	97 aa		3.94	□□□□□ -1.78
RPT3	YDR394W	YDR246W-A	Q3E763	66 aa		3.93	□□□□□ -1.78
RPT3	YDR394W	YJL197C-A	P0C5P0	93 aa		3.92	□□□□□ -1.78
RPT3	YDR394W	YER187W	P40102	141 aa		3.92	□□□□□ -1.78
RPT3	YDR394W	YJR085C	P47131	105 aa	Known RBP	3.92	□□□□□ -1.78
RPT3	YDR394W	YIR021W-A	Q3E739	70 aa		3.92	□□□□□ -1.78
RPT3	YDR394W	YCR043C	P25361	127 aa		3.91	□□□□□ -1.78
RPT3	YDR394W	YPL080C	Q02826	108 aa		3.91	□□□□□ -1.78
RPT3	YDR394W	LCL2	Q08045	131 aa		3.91	□□□□□ -1.78
RPT3	YDR394W	AIM4	P38305	123 aa	Predicted RBP	3.89	□□□□□ -1.79
RPT3	YDR394W	YMR230W-A	Q3E7B5	62 aa		3.89	□□□□□ -1.79
RPT3	YDR394W	NOP10	Q6Q547	58 aa	Predicted RBP	3.89	□□□□□ -1.79
RPT3	YDR394W	YDR182W-A	Q3E796	67 aa		3.88	□□□□□ -1.79
RPT3	YDR394W	YBR027C	P38220	110 aa		3.87	□□□□□ -1.79
RPT3	YDR394W	YOL097W-A	Q3E7Y9	61 aa		3.87	□□□□□ -1.79
RPT3	YDR394W	YLR157W-D	P0CE99	70 aa		3.86	□□□□□ -1.79
RPT3	YDR394W	MMS2	P53152	137 aa		3.86	□□□□□ -1.79
RPT3	YDR394W	RPL36A	P05745	100 aa	Predicted RBP	3.85	□□□□□ -1.79
RPT3	YDR394W	YAR064W	P39563	99 aa		3.85	□□□□□ -1.79
RPT3	YDR394W	YOR268C	Q08734	132 aa		3.84	□□□□□ -1.79
RPT3	YDR394W	YOL166W-A	Q8TGJ1	51 aa		3.84	□□□□□ -1.79
RPT3	YDR394W	LIP1	Q03579	150 aa		3.83	□□□□□ -1.8
RPT3	YDR394W	YOL013W-A	P0C272	63 aa	Predicted RBP	3.82	□□□□□ -1.8
RPT3	YDR394W	YIL102C	P40488	101 aa		3.81	□□□□□ -1.8
RPT3	YDR394W	YGL149W	P53116	101 aa		3.78	□□□□□ -1.8
RPT3	YDR394W	YPR153W	Q06537	140 aa		3.78	□□□□□ -1.8
RPT3	YDR394W	YHL005C	P38752	130 aa		3.76	□□□□□ -1.81
RPT3	YDR394W	YDL012C	Q12489	107 aa		3.76	□□□□□ -1.81
RPT3	YDR394W	YHR073W-A	P0C5N7	58 aa		3.74	□□□□□ -1.81
RPT3	YDR394W	RPS30A	P0CX33	63 aa	Known RBP	3.74	□□□□□ -1.81
RPT3	YDR394W	RPS30B	P0CX34	63 aa	Known RBP	3.74	□□□□□ -1.81
RPT3	YDR394W	YLR361C-A	Q3E795	98 aa		3.74	□□□□□ -1.81
RPT3	YDR394W	DDR48	P18899	430 aa	Known RBP	3.73	□□□□□ -1.81
RPT3	YDR394W	YHR125W	P38831	101 aa		3.73	□□□□□ -1.81
RPT3	YDR394W	KSH1	Q8TGJ3	72 aa		3.73	□□□□□ -1.81
RPT3	YDR394W	SBH1	P52870	82 aa		3.7	□□□□□ -1.82
RPT3	YDR394W	SDH6	Q3E785	79 aa		3.69	□□□□□ -1.82
RPT3	YDR394W	KTI11	Q3E840	82 aa		3.69	□□□□□ -1.82
RPT3	YDR394W	MDN1	Q12019	4910 aa	Known RBP	3.68	□□□□□ -1.82

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms