RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ARL14EPQ8N8R7 260 aaPredicted RBP12.34□□□□□ -0.43
CLN3-257ENST00000637110 USP13Q92995 863 aaPredicted RBP12.34□□□□□ -0.43
CLN3-257ENST00000637110 CEP295NLQ96MC4 621 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 LRRC3BQ96PB8 259 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 SLITRK1Q96PX8 696 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 CYP2S1Q96SQ9 504 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 ADAM33Q9BZ11 813 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 ARRDC1-AS1Q9H2J1 176 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 C8orf33Q9H7E9 229 aaPredicted RBP12.34□□□□□ -0.43
CLN3-257ENST00000637110 KIF9Q9HAQ2 790 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 TRPV5Q9NQA5 729 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 FAM49BQ9NUQ9 324 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 GTSE1Q9NYZ3 720 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 MAN1B1Q9UKM7 699 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 CCL26Q9Y258 94 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 TICRRQ7Z2Z1 1910 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 SRRM3A6NNA2 597 aaPredicted RBP12.33□□□□□ -0.44
CLN3-257ENST00000637110 AXIN1O15169 862 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 AP1G2O75843 785 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 CCDC130P13994 396 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 YWHAQP27348 245 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 ADORA2BP29275 332 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 PPP1R2P41236 205 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 ASPAP45381 313 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 PDE6CP51160 858 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 CACNA2D1P54289 1103 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 USP46P62068 366 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 LRRC63Q05C16 580 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 ENPEPQ07075 957 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 TNK2Q07912 1038 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 FOXC1Q12948 553 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 TAF10Q12962 218 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 ITPRIPL2Q3MIP1 535 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 CCDC40Q4G0X9 1142 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 HEATR6Q6AI08 1181 aaKnown RBP12.33□□□□□ -0.44
CLN3-257ENST00000637110 UNC93AQ86WB7 457 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 NUP93Q8N1F7 819 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 SLC2A14Q8TDB8 520 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 SMARCD1Q96GM5 515 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 MSANTD3Q96H12 275 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 DHTKD1Q96HY7 919 aaPredicted RBP12.33□□□□□ -0.44
CLN3-257ENST00000637110 KCNK16Q96T55 309 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 NIF3L1Q9GZT8 377 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 CYP3A43Q9HB55 503 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 KRT82Q9NSB4 513 aa12.33□□□□□ -0.44
CLN3-257ENST00000637110 NUP210Q8TEM1 1887 aaPredicted RBP12.33□□□□□ -0.44
CLN3-257ENST00000637110 SETXQ7Z333 2677 aaKnown RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 C2orf78A6NCI8 922 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 SPECC1L-ADORA2AF8WAN1 911 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 SLC16A3O15427 465 aaKnown RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 TADA3O75528 432 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 RTN3O95197 1032 aaPredicted RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 EPN2O95208 641 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 CHRNB1P11230 501 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 HOXA6P31267 233 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 PPP3CCP48454 512 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 IFNAR2P48551 515 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 NOVA1P51513 510 aaKnown RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 PMS1P54277 932 aaKnown RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 RING1Q06587 406 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 MTF1Q14872 753 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 ZNF394Q53GI3 561 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 COBLL1Q53SF7 1204 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 RNF43Q68DV7 783 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 TRIM68Q6AZZ1 485 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 CACNA2D4Q7Z3S7 1137 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 ELOA2Q8IYF1 753 aaPredicted RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 FBXL13Q8NEE6 735 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 SPATA20Q8TB22 786 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 NELFBQ8WX92 580 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 FBXO32Q969P5 355 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 JAKMIP2Q96AA8 810 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 SLC22A12Q96S37 553 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 NT5C1AQ9BXI3 368 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 NACA2Q9H009 215 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 EBF3Q9H4W6 596 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 APOBEC3GQ9HC16 384 aaKnown RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 DMAP1Q9NPF5 467 aaPredicted RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 RAB20Q9NX57 234 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 DUS2Q9NX74 493 aaKnown RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 HMGXB4Q9UGU5 601 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 ARMCX3Q9UH62 379 aaPredicted RBP12.32□□□□□ -0.44
CLN3-257ENST00000637110 CTNND2Q9UQB3 1225 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 PCDHGA5Q9Y5G8 931 aa12.32□□□□□ -0.44
CLN3-257ENST00000637110 COL4A2P08572 1712 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 BICDL2A1A5D9 508 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 ZNF840PA6NDX5 716 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 K7ESF4 209 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 ARNTLO00327 626 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 FAM200BP0CF97 657 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 MBL2P11226 248 aaPredicted RBP12.31□□□□□ -0.44
CLN3-257ENST00000637110 CTHP32929 405 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 MLLT6P55198 1093 aaPredicted RBP12.31□□□□□ -0.44
CLN3-257ENST00000637110 STX17P56962 302 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 MAP3K7CLP57077 242 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 UBE2HP62256 183 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 AMPD2Q01433 879 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 ZNF252P-AS1Q0IIN9 211 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 RUNX3Q13761 415 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 ZNF268Q14587 947 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms