RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FILIP1Q7Z7B0 1213 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 ACOT1Q86TX2 421 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 TTC16Q8NEE8 873 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 ZMIZ2Q8NF64 920 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 RPLP0P6Q8NHW5 317 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 NETO1Q8TDF5 533 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 FBXO32Q969P5 355 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 ZFRQ96KR1 1074 aaKnown RBP18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 TBC1D14Q9P2M4 693 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 CDV3Q9UKY7 258 aaKnown RBP18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 K7EQS6 105 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 COCHO43405 550 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 HLA-DRAP01903 254 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 PXNP49023 591 aaPredicted RBP18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 NDST1P52848 882 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 INCA1Q0VD86 236 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 DMC1Q14565 340 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 DHCR24Q15392 516 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 ZCWPW2Q504Y3 356 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 HECTD3Q5T447 861 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 RHBDF2Q6PJF5 856 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 SCARA5Q6ZMJ2 495 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 PRR23CQ6ZRP0 262 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 SCAMP5Q8TAC9 235 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 USP33Q8TEY7 942 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 OTUB2Q96DC9 234 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 SMOQ99835 787 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 MED10Q9BTT4 135 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 CYP3A43Q9HB55 503 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 KRT82Q9NSB4 513 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 SMPD4Q9NXE4 827 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 CFAP97Q9P2B7 532 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 KIAA1549LQ6ZVL6 1849 aa18.25■□□□□ 0.51
VPS9D1-203ENST00000563798 SLC30A4O14863 429 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 AXIN1O15169 862 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 AP1G2O75843 785 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 EPN2O95208 641 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 APBB3O95704 486 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 ABL1P00519 1130 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 MBL2P11226 248 aaPredicted RBP18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 NR2F2P24468 414 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 RPL13P26373 211 aaKnown RBP18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 ELMO3Q96BJ8 720 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 FAXDC2Q96IV6 333 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 HNRNPABQ99729 332 aaKnown RBP18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 GOLPH3LQ9H4A5 285 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 POLR3BQ9NW08 1133 aaPredicted RBP18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 HMGXB4Q9UGU5 601 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 CHORDC1Q9UHD1 332 aaPredicted RBP18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 PCDHGA5Q9Y5G8 931 aa18.24■□□□□ 0.51
VPS9D1-203ENST00000563798 MYO16Q9Y6X6 1858 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 BEST1O76090 585 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 ZNF202O95125 648 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 CHRM1P11229 460 aaPredicted RBP18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 GTF2H1P32780 548 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 PSMC2P35998 433 aaKnown RBP18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 PIK3CAP42336 1068 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 MRPS21P82921 87 aaKnown RBP18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 PPP3CAQ08209 521 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 IFRD2Q12894 506 aaPredicted RBP18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 SPOPLQ6IQ16 392 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 KBTBD6Q86V97 674 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 SLC2A14Q8TDB8 520 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 HHIPQ96QV1 700 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 FBXO44Q9H4M3 255 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 PNPLA8Q9NP80 782 aa18.23■□□□□ 0.51
VPS9D1-203ENST00000563798 ADH1CP00326 375 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 ZNF806P0C7X5 589 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 CCDC192P0DO97 292 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 CCDC130P13994 396 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 ADAM9Q13443 819 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 EDRF1Q3B7T1 1238 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 PLK5Q496M5 336 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 HSF5Q4G112 596 aaPredicted RBP18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 PLA2G2CQ5R387 149 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 RASSF3Q86WH2 238 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 FAM186BQ8IYM0 893 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 C12orf29Q8N999 325 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 TAS1R2Q8TE23 839 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 PNKPQ96T60 521 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 IMPG2Q9BZV3 1241 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 CCSER2Q9H7U1 834 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 APOBEC3GQ9HC16 384 aaKnown RBP18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 GMIPQ9P107 970 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 MMP17Q9ULZ9 603 aa18.22■□□□□ 0.51
VPS9D1-203ENST00000563798 HHLA1C9JL84 531 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 CLSTN1O94985 981 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 KRT13P13646 458 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 TRIM21P19474 475 aaKnown RBP18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 GCLMP48507 274 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 LIMK1P53667 647 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 CLEC20AQ6ZU45 233 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 WHAMMQ8TF30 809 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 TWNKQ96RR1 684 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 NT5C1AQ9BXI3 368 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 NIF3L1Q9GZT8 377 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 FAM124BQ9H5Z6 455 aaPredicted RBP18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 TMEM8AQ9HCN3 771 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 CYLDQ9NQC7 956 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms