RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PNISRQ8TF01 805 aaKnown RBP3.36□□□□□ -1.87
VPS13C-205ENST00000558088 TMEM171Q8WVE6 324 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 PPP2R3CQ969Q6 453 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 TMEM184CQ9NVA4 438 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 HEY2Q9UBP5 337 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 USP22Q9UPT9 525 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 STXBP5LQ9Y2K9 1186 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 PRSS44E7EML9 344 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 SMAD6O43541 496 aaKnown RBP3.35□□□□□ -1.87
VPS13C-205ENST00000558088 TMPRSS11DO60235 418 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 AKAP5P24588 427 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 CDC25AP30304 524 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 CDKN1CP49918 316 aaPredicted RBP3.35□□□□□ -1.87
VPS13C-205ENST00000558088 HSF1Q00613 529 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 PSG6Q00889 435 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 LMAN2Q12907 356 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 TMEM240Q5SV17 173 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 RANBP10Q6VN20 620 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 GAS2L3Q86XJ1 694 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 ADHFE1Q8IWW8 467 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 HSPBAP1Q96EW2 488 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 ZFYVE19Q96K21 471 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 MS4A7Q9GZW8 240 aaPredicted RBP3.35□□□□□ -1.87
VPS13C-205ENST00000558088 ARMT1Q9H993 441 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 PROCRQ9UNN8 238 aa3.35□□□□□ -1.87
VPS13C-205ENST00000558088 DRG1Q9Y295 367 aaKnown RBP3.35□□□□□ -1.87
VPS13C-205ENST00000558088 FNDC1Q4ZHG4 1894 aaPredicted RBP3.35□□□□□ -1.87
VPS13C-205ENST00000558088 EME2A4GXA9 379 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 LACTBL1A8MY62 500 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 CNOT3O75175 753 aaKnown RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 TOMM40O96008 361 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 CTSAP10619 480 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 CREB1P16220 341 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 EPHA3P29320 983 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 BCAT1P54687 386 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 CFHR1Q03591 330 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 FGL2Q14314 439 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 ZIK1Q3SY52 487 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 AWAT1Q58HT5 328 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 DLK2Q6UY11 383 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 PIP4P1Q86T03 277 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 MPP5Q8N3R9 675 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 PRPF38AQ8NAV1 312 aaKnown RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 ZNF548Q8NEK5 533 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 OR6B3Q8NGW1 331 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 MAFAQ8NHW3 353 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 GTPBP4Q9BZE4 634 aaKnown RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 GBA2Q9HCG7 927 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 MGAT4CQ9UBM8 478 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 LUC7L2Q9Y383 392 aaKnown RBP3.34□□□□□ -1.87
VPS13C-205ENST00000558088 PAXBP1Q9Y5B6 917 aa3.34□□□□□ -1.87
VPS13C-205ENST00000558088 A0A087WWL8 130 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 RGS10O43665 173 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 SYF2O95926 243 aaKnown RBP3.33□□□□□ -1.88
VPS13C-205ENST00000558088 CD63P08962 238 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 APEHP13798 732 aaKnown RBP3.33□□□□□ -1.88
VPS13C-205ENST00000558088 TACR3P29371 465 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 CPA2P48052 419 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 DIO1P49895 249 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 STIM1Q13586 685 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 RAB32Q13637 225 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 PFKFB3Q16875 520 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-205ENST00000558088 ZNF750Q32MQ0 723 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 ZNF549Q6P9A3 640 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 ZNF793Q6ZN11 406 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 GRAMD1CQ8IYS0 662 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 MMP21Q8N119 569 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 CELF5Q8N6W0 485 aaKnown RBP3.33□□□□□ -1.88
VPS13C-205ENST00000558088 KBTBD7Q8WVZ9 684 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 RAPGEF4Q8WZA2 1011 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 NLRP4Q96MN2 994 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 NUP88Q99567 741 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-205ENST00000558088 P2RX7Q99572 595 aaKnown RBP3.33□□□□□ -1.88
VPS13C-205ENST00000558088 CGRRF1Q99675 332 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 LPAR3Q9UBY5 353 aa3.33□□□□□ -1.88
VPS13C-205ENST00000558088 A0A1W2PPL8 197 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 MARCH6O60337 910 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 TBC1D4O60343 1298 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 USP12O75317 370 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 RASAL1O95294 804 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 KCNJ4P48050 445 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 INSCQ1MX18 579 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 UBAP2Q5T6F2 1119 aaKnown RBP3.32□□□□□ -1.88
VPS13C-205ENST00000558088 LCE1EQ5T753 118 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 DCAF12L1Q5VU92 463 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 UBE2Q1Q7Z7E8 422 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 ZBTB46Q86UZ6 589 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 LINC01465Q8N7H1 131 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 DNAJB14Q8TBM8 379 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 C1GALT1C1Q96EU7 318 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 HIC2Q96JB3 615 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 MRGPRX1Q96LB2 322 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 CTAGE1Q96RT6 745 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 VN1R3Q9BXE9 311 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 TRIM36Q9NQ86 728 aa3.32□□□□□ -1.88
VPS13C-205ENST00000558088 IGLV5-39A0A0G2JS06 123 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 BTN3A1O00481 513 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 AP1G1O43747 822 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 SRGAP2O75044 1071 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 OFD1O75665 1012 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms