RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 SNX14Q9Y5W7 946 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 SPATA31A6Q5VVP1 1343 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 RASA4BC9J798 803 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 QSOX1O00391 747 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 RASA4O43374 803 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 SETSIPP0DME0 302 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 TNFSF4P23510 183 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 CD38P28907 300 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 EPHA3P29320 983 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 SERPINB3P29508 390 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 DEKP35659 375 aaKnown RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 CLK3P49761 638 aaKnown RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 CCT8P50990 548 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 BCAT1P54687 386 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 TPTEP56180 551 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 HTRA4P83105 476 aaPredicted RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 POU5F1BQ06416 359 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 NPY5RQ15761 445 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 ZNF750Q32MQ0 723 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 TMEM95Q3KNT9 176 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 FAM209BQ5JX69 171 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 TSTD2Q5T7W7 516 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 RRAGBQ5VZM2 374 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 SLC9A4Q6AI14 798 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 PLAG1Q6DJT9 500 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 FCRL6Q6DN72 434 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 ERAP2Q6P179 960 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 FBXO42Q6P3S6 717 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 MZT2AQ6P582 158 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 WDR53Q7Z5U6 358 aaPredicted RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 SRLQ86TD4 932 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 CAND1Q86VP6 1230 aaKnown RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 TICAM2Q86XR7 235 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 RAB11FIP4Q86YS3 637 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 OR2C3Q8N628 320 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 BOLLQ8N9W6 283 aaKnown RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 ACRBPQ8NEB7 543 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 SOCS4Q8WXH5 440 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 LRRC46Q96FV0 321 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 ZNF668Q96K58 619 aaPredicted RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 RIPOR3Q96MK2 946 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 UROC1Q96N76 676 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 NAP1L4Q99733 375 aaKnown RBP3.83□□□□□ -1.8
USP28-210ENST00000542033 C17orf80Q9BSJ5 609 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 COLEC11Q9BWP8 271 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 MAGEB5Q9BZ81 275 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 TRIM5Q9C035 493 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 ZCWPW1Q9H0M4 648 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 PPCSQ9HAB8 311 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 PRDM16Q9HAZ2 1276 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 PTPRHQ9HD43 1115 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 PTGFRNQ9P2B2 879 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 DKK4Q9UBT3 224 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 CEP83Q9Y592 693 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 ENTPD2Q9Y5L3 495 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 COX11Q9Y6N1 276 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 CCDC180Q9P1Z9 1646 aa3.83□□□□□ -1.8
USP28-210ENST00000542033 ABHD14A-ACY1A0A1B0GW23 586 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 CLCA1A8K7I4 914 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 AREL1O15033 823 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 CD3EAPO15446 510 aaKnown RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 SNX2O60749 519 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 C1RP00736 705 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 A1BGP04217 495 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 PRKCBP05771 671 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 DLDP09622 509 aaKnown RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 FAM163BP0C2L3 166 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 MYL4P12829 197 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 HGFP14210 728 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 IDEP14735 1019 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 FGFR2P21802 821 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 UQCRC1P31930 480 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 CYP2C18P33260 490 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 TM4SF4P48230 202 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 ALDH5A1P51649 535 aaPredicted RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 PGDP52209 483 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 CHAF1AQ13111 956 aaPredicted RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 KCNAB1Q14722 419 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 LY6KQ17RY6 165 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 ARL13BQ3SXY8 428 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 ANO1Q5XXA6 986 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 DPY19L2P1Q6NXN4 242 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 ANKRD16Q6P6B7 361 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 SYCE2Q6PIF2 218 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 C1orf228Q6PIY5 440 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 TMED8Q6PL24 325 aaPredicted RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 PARS2Q7L3T8 475 aaKnown RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 RASAL3Q86YV0 1011 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 TXLNBQ8N3L3 684 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 RNF152Q8N8N0 203 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 RP9Q8TA86 221 aaKnown RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 IPO4Q8TEX9 1081 aaKnown RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 HERPUD2Q9BSE4 406 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 INO80BQ9C086 356 aaPredicted RBP3.82□□□□□ -1.8
USP28-210ENST00000542033 MAF1Q9H063 256 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 CERS4Q9HA82 394 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 CPNE5Q9HCH3 593 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 IL17RBQ9NRM6 502 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 SEMA4GQ9NTN9 838 aa3.82□□□□□ -1.8
USP28-210ENST00000542033 SERTAD4Q9NUC0 356 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms