RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 GLTPD2A6NH11 291 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 ZWINTO95229 277 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 ASMTLO95671 621 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 ZFXP17010 805 aaPredicted RBP15.5■□□□□ 0.07
NUP54-217ENST00000514987 PNPLA4P41247 253 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 PTPN9P43378 593 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 GPX6P59796 221 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 CCDC14Q49A88 953 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 PPP1R26Q5T8A7 1209 aaPredicted RBP15.5■□□□□ 0.07
NUP54-217ENST00000514987 ADGRD1Q6QNK2 874 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 C3orf62Q6ZUJ4 267 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 CYP4V2Q6ZWL3 525 aaPredicted RBP15.5■□□□□ 0.07
NUP54-217ENST00000514987 SLC35F5Q8WV83 523 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 RTP4Q96DX8 246 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 ZNF560Q96MR9 790 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 ZNF670Q9BS34 389 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 DHRS4Q9BTZ2 278 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 PRDM16Q9HAZ2 1276 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 UBQLN1Q9UMX0 589 aaKnown RBP15.5■□□□□ 0.07
NUP54-217ENST00000514987 SNX9Q9Y5X1 595 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 ZNF236Q9UL36 1845 aa15.5■□□□□ 0.07
NUP54-217ENST00000514987 BCLAF3A2AJT9 711 aaKnown RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 H7C0C1 242 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 APOL1O14791 398 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 TAC1P20366 129 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 HOXA11P31270 313 aaPredicted RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 MSH2P43246 934 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 ACADSBP45954 432 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 ATP5OP48047 213 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 BASP1P80723 227 aaKnown RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 TAF5Q15542 800 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 PKN2Q16513 984 aaKnown RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 FAM110CQ1W6H9 321 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 KIZQ2M2Z5 673 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 FNBP1LQ5T0N5 605 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 ANKRD22Q5VYY1 191 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 RNF43Q68DV7 783 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 ACOT1Q86TX2 421 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 ANKMY2Q8IV38 441 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 FBXO36Q8NEA4 188 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 BRI3BPQ8WY22 251 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 CYTH2Q99418 400 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 MRPL45Q9BRJ2 306 aaKnown RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 PITPNM3Q9BZ71 974 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 KLC4Q9NSK0 619 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 SETD4Q9NVD3 440 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 SNTG2Q9NY99 539 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 KLHL14Q9P2G3 628 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 PRKAG3Q9UGI9 489 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 STARD13Q9Y3M8 1113 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 CLUHO75153 1309 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 MBLAC1A4D2B0 266 aaPredicted RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 A6NJR5 290 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 GOLGA8MH3BSY2 632 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 GPR32O75388 356 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 GSTA2P09210 222 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 DARSP14868 501 aaKnown RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 YBX3P16989 372 aaKnown RBP eCLIP15.49■□□□□ 0.071e-7■■■■■ 28.9
NUP54-217ENST00000514987 BCAR1P56945 870 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 WDR4P57081 412 aaKnown RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 CCDC15Q0P6D6 951 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 PDK4Q16654 411 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 C15orf59Q2T9L4 293 aaPredicted RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 BBS9Q3SYG4 887 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 HHATQ5VTY9 493 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 SLC9A4Q6AI14 798 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 TRNP1Q6NT89 227 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 PMF1Q6P1K2 205 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 ALKAL1Q6UXT8 129 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 CRYBG2Q8N1P7 616 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 PLD5Q8N7P1 536 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 C12orf29Q8N999 325 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 FAM172AQ8WUF8 416 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 FAF2Q96CS3 445 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 TRIM6Q9C030 488 aaPredicted RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 RXFP1Q9HBX9 757 aa15.49■□□□□ 0.07
NUP54-217ENST00000514987 NGRNQ9NPE2 291 aaKnown RBP15.49■□□□□ 0.07
NUP54-217ENST00000514987 TM9SF1O15321 606 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 TYROBPO43914 113 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 ITGBL1O95965 494 aaPredicted RBP15.48■□□□□ 0.07
NUP54-217ENST00000514987 F2P00734 622 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 FAM163BP0C2L3 166 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 SMIM10L2AP0DMW4 78 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 SMIM10L2BP0DMW5 78 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 CA4P22748 312 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 RPL34P49207 117 aaKnown RBP15.48■□□□□ 0.07
NUP54-217ENST00000514987 RGS7P49802 495 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 BCAT1P54687 386 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 BST2Q10589 180 aaKnown RBP15.48■□□□□ 0.07
NUP54-217ENST00000514987 MMRN1Q13201 1228 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 KCNJ11Q14654 390 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 HP1BP3Q5SSJ5 553 aaPredicted RBP15.48■□□□□ 0.07
NUP54-217ENST00000514987 C9orf57Q5W0N0 161 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 SCYL2Q6P3W7 929 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 SLC26A9Q7LBE3 791 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 TTC30AQ86WT1 665 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 CDKL3Q8IVW4 592 aaPredicted RBP15.48■□□□□ 0.07
NUP54-217ENST00000514987 FUKQ8N0W3 1084 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 TMEM130Q8N3G9 435 aa15.48■□□□□ 0.07
NUP54-217ENST00000514987 ANKRD52Q8NB46 1076 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms