RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 KCNN4O15554 427 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 PRPSAP2O60256 369 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 TCEA3O75764 348 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 VDRP11473 427 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 RBL1P28749 1068 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 HOXA11P31270 313 aaPredicted RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 ZNF143P52747 638 aaPredicted RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 ZNF268Q14587 947 aaPredicted RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 PPP1R2P3Q6NXS1 205 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 CCDC110Q8TBZ0 833 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 ACTR5Q9H9F9 607 aaPredicted RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 SLC17A7Q9P2U7 560 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 ZSWIM8A7E2V4 1837 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 A0A1B0GUA9 196 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 DYNC1LI2O43237 492 aaPredicted RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 PAPSS1O43252 624 aaPredicted RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 ASMTLO95671 621 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 MMP3P08254 477 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 YWHAGP61981 247 aaKnown RBP eCLIP13□□□□□ -0.33
HMGN1-220ENST00000492280 ROR1Q01973 937 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 LVRNQ6Q4G3 990 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 CTU1Q7Z7A3 348 aaKnown RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 ECHDC2Q86YB7 292 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 PALM2Q8IXS6 379 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 BRI3BPQ8WY22 251 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 TBC1D31Q96DN5 1066 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 PGLYRP2Q96PD5 576 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 SMC6Q96SB8 1091 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 SNRNP25Q9BV90 132 aaKnown RBP13□□□□□ -0.33
HMGN1-220ENST00000492280 PITPNM3Q9BZ71 974 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 KDM4CQ9H3R0 1056 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 ECT2Q9H8V3 914 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 RAB6BQ9NRW1 208 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 SLC12A4Q9UP95 1085 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 STK38LQ9Y2H1 464 aa13□□□□□ -0.33
HMGN1-220ENST00000492280 ABHD2P08910 425 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 IL4RP24394 825 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PTPN7P35236 360 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 ARL4CP56559 192 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 NCALDP61601 193 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 RBP5P82980 135 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 TNFAIP2Q03169 654 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 ITIH4Q14624 930 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 LACTB2Q53H82 288 aaPredicted RBP12.99□□□□□ -0.33
HMGN1-220ENST00000492280 ICE2Q659A1 982 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PRPF39Q86UA1 669 aaKnown RBP12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PYROXD2Q8N2H3 581 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PLD5Q8N7P1 536 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 CMASQ8NFW8 434 aaPredicted RBP12.99□□□□□ -0.33
HMGN1-220ENST00000492280 NPLOC4Q8TAT6 608 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 CCHCR1Q8TD31 782 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 FNIP1Q8TF40 1166 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 P3H4Q92791 437 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 ASB7Q9H672 318 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 ASNSD1Q9NWL6 643 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 SPTLC1O15269 473 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 RECQL4O94761 1208 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PITX1P78337 314 aaPredicted RBP12.99□□□□□ -0.33
HMGN1-220ENST00000492280 OLFML1Q6UWY5 402 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 GPR142Q7Z601 462 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 CEP57Q86XR8 500 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 RELL1Q8IUW5 271 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 EXOC8Q8IYI6 725 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PQLC3Q8N755 202 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PCDH19Q8TAB3 1148 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 FAF2Q96CS3 445 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 MAGEB18Q96M61 343 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 MAF1Q9H063 256 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PSMC3IPQ9P2W1 217 aaPredicted RBP12.99□□□□□ -0.33
HMGN1-220ENST00000492280 BAIAP2L1Q9UHR4 511 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 PPME1Q9Y570 386 aa12.99□□□□□ -0.33
HMGN1-220ENST00000492280 A8MXQ7 604 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 IGF2BP3O00425 579 aaKnown RBP eCLIP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 UGT1A9O60656 530 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 SUN1O94901 812 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 F7P08709 466 aaPredicted RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 ACAT1P24752 427 aaKnown RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 GRIA1P42261 906 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 GBE1Q04446 702 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 FAM187BQ17R55 369 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 KBTBD12Q3ZCT8 623 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 DNAJB3Q8WWF6 145 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 KHSRPQ92945 711 aaKnown RBP eCLIP12.98□□□□□ -0.331e-7■■□□□ 13.3
HMGN1-220ENST00000492280 TMEM237Q96Q45 408 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 CNPY3Q9BT09 278 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 TRIM6Q9C030 488 aaPredicted RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 UGT1A7Q9HAW7 530 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 UGT1A10Q9HAW8 530 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 UGT1A8Q9HAW9 530 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 GBA2Q9HCG7 927 aaPredicted RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 SLC17A6Q9P2U8 582 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 PHTF1Q9UMS5 762 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 PIN4Q9Y237 131 aaKnown RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 TOP3BO95985 862 aaKnown RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 APRTP07741 180 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 P4HA1P13674 534 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 GABRB2P47870 512 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 ELF3P78545 371 aaPredicted RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 BEX3Q00994 111 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 INCA1Q0VD86 236 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms