RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 NDUFV1P49821 464 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 PGDP52209 483 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 RPS7P62081 194 aaKnown RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 HSD11B2P80365 405 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 MAPK7Q13164 816 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 ZNF124Q15973 351 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 ARHGAP40Q5TG30 622 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 ICE2Q659A1 982 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 RGS7BPQ6MZT1 257 aaPredicted RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 FOXR2Q6PJQ5 311 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 SPOCD1Q6ZMY3 1216 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 MICALCLQ6ZW33 695 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 HEATR4Q86WZ0 1026 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 KRTAP1-3Q8IUG1 177 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 MAPKAPK5Q8IW41 473 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 GSPT2Q8IYD1 628 aaKnown RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 POU5F2Q8N7G0 328 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 SUN3Q8TAQ9 357 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 HIST1H2AAQ96QV6 131 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 GPR20Q99678 358 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 PAAF1Q9BRP4 392 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 TMX4Q9H1E5 349 aaPredicted RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 ALG13Q9NP73 1137 aaKnown RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 RNF181Q9P0P0 153 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 PPP4R1LQ9P1A2 415 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 ZFR2Q9UPR6 939 aaKnown RBP5.88□□□□□ -1.47
UPF3B-203ENST00000478840 SSX2IPQ9Y2D8 614 aa5.88□□□□□ -1.47
UPF3B-203ENST00000478840 MYADML2A6NDP7 307 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 F5H0A9 414 aaPredicted RBP5.87□□□□□ -1.47
UPF3B-203ENST00000478840 TOR1BO14657 336 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 ZNF185O15231 689 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 FOXS1O43638 330 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 RNASEH2AO75792 299 aaKnown RBP5.87□□□□□ -1.47
UPF3B-203ENST00000478840 ZFPL1O95159 310 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 DDX58O95786 925 aaKnown RBP5.87□□□□□ -1.47
UPF3B-203ENST00000478840 ELANEP08246 267 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 HGFP14210 728 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 EPHA3P29320 983 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 PRKAR1BP31321 381 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 NPTX2P47972 431 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 GATMP50440 423 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 PDE6CP51160 858 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 NR1H2P55055 460 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 HHEXQ03014 270 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 CSHL1Q14406 222 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 BTBD16Q32M84 506 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 MAMDC4Q6UXC1 1216 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 DSTYKQ6XUX3 929 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 TRABD2AQ86V40 505 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 TTC30AQ86WT1 665 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 ADGRG5Q8IZF4 528 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 ABRAQ8N0Z2 381 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 TMEM57Q8N5G2 664 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 USP38Q8NB14 1042 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 CSGALNACT1Q8TDX6 532 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 CPT1BQ92523 772 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 INO80BQ9C086 356 aaPredicted RBP5.87□□□□□ -1.47
UPF3B-203ENST00000478840 ELAC1Q9H777 363 aaKnown RBP5.87□□□□□ -1.47
UPF3B-203ENST00000478840 NOD2Q9HC29 1040 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 RXFP3Q9NSD7 469 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 TMEM74BQ9NUR3 256 aa5.87□□□□□ -1.47
UPF3B-203ENST00000478840 XDHP47989 1333 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 GXYLT2A0PJZ3 443 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 MARCH11A6NNE9 402 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 BTBD11A6QL63 1104 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 GRXCR1A8MXD5 290 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 E7EVH7 732 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 AGPSO00116 658 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 TRIM24O15164 1050 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 TRIAP1O43715 76 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 CFIP05156 583 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 CD6P30203 668 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 AKT1P31749 480 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 RNASE9P60153 205 aaKnown RBP5.86□□□□□ -1.47
UPF3B-203ENST00000478840 JAG1P78504 1218 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 TUBB3Q13509 450 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 SLC12A1Q13621 1099 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 ACOX1Q15067 660 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 DLGAP5Q15398 846 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 NBPF8Q3BBV2 869 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 NRN1LQ496H8 165 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 PDCD4Q53EL6 469 aaKnown RBP5.86□□□□□ -1.47
UPF3B-203ENST00000478840 RBM20Q5T481 1227 aaKnown RBP5.86□□□□□ -1.47
UPF3B-203ENST00000478840 B3GNTL1Q67FW5 361 aaPredicted RBP5.86□□□□□ -1.47
UPF3B-203ENST00000478840 SP5Q6BEB4 398 aaPredicted RBP5.86□□□□□ -1.47
UPF3B-203ENST00000478840 MSANTD2Q6P1R3 559 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 Q6ZSN1 163 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 RRAGAQ7L523 313 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 TMEM132CQ8N3T6 1108 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 RFFLQ8WZ73 363 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 SNX19Q92543 992 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 ZBTB10Q96DT7 871 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 BOD1Q96IK1 185 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 ZSWIM1Q9BR11 485 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 AGXT2Q9BYV1 514 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 UNKLQ9H9P5 680 aaKnown RBP5.86□□□□□ -1.47
UPF3B-203ENST00000478840 TRIM36Q9NQ86 728 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 SMC4Q9NTJ3 1288 aa5.86□□□□□ -1.47
UPF3B-203ENST00000478840 USP22Q9UPT9 525 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms