RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 MIEF2Q96C03 454 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 FAXDC2Q96IV6 333 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 TWNKQ96RR1 684 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 PTPN18Q99952 460 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 NPHS2Q9NP85 383 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 SLC5A4Q9NY91 659 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 USP18Q9UMW8 372 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 B4GALT5O43286 388 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 HBP1O60381 514 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 CSDE1O75534 798 aaKnown RBP14.91□□□□□ -0.02
LIG1-202ENST00000427526 CBX6O95503 412 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 RBP3P10745 1247 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 CLNS1AP54105 237 aaKnown RBP14.91□□□□□ -0.02
LIG1-202ENST00000427526 CBLBQ13191 982 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 EEF1DP3Q658K8 133 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 TMEM192Q8IY95 271 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 FAM13CQ8NE31 585 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 AFG1LQ8WV93 481 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 PPP1R16BQ96T49 567 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 MINDY3Q9H8M7 445 aa14.91□□□□□ -0.02
LIG1-202ENST00000427526 NKX1-2Q9UD57 310 aaPredicted RBP14.91□□□□□ -0.02
LIG1-202ENST00000427526 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 GOLGA8RI6L899 631 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 INO80B-WBP1J3KQ70 363 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 DHRS4L1P0CG22 281 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 INSRRP14616 1297 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 RNASELQ05823 741 aaKnown RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 ORC1Q13415 861 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ZNF667Q5HYK9 610 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 CYP4V2Q6ZWL3 525 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 TMEM130Q8N3G9 435 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 C1orf127Q8N9H9 656 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 CXorf38Q8TB03 319 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 SPATA18Q8TC71 538 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 GTF3C2Q8WUA4 911 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 PTPRN2Q92932 1015 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 PEBP4Q96S96 227 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 CYTH2Q99418 400 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 INO80BQ9C086 356 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 ELOVL4Q9GZR5 314 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 TLE6Q9H808 572 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 MANSC1Q9H8J5 431 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 SAR1AQ9NR31 198 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ERAP1Q9NZ08 941 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 HMGXB4Q9UGU5 601 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 LNPEPQ9UIQ6 1025 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 SCN4AP35499 1836 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 WDR91A4D1P6 747 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 CELF2O95319 508 aaKnown RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 SNAI1O95863 264 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 LGALS2P05162 132 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ZNF286BP0CG31 522 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 GM2AP17900 193 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 GNAZP19086 355 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 STIP1P31948 543 aaKnown RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 ETV4P43268 484 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 GPD2P43304 727 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 SLC26A2P50443 739 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 RASSF2P50749 326 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 FYB2Q5VWT5 728 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ZNF449Q6P9G9 518 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 CLNKQ7Z7G1 428 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 MTDHQ86UE4 582 aaKnown RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 RFWD2Q8NHY2 731 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 HSPH1Q92598 858 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 KLF6Q99612 283 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 RSAD1Q9HA92 442 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 RRAGCQ9HB90 399 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 TEX264Q9Y6I9 313 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 MCF2LO15068 1137 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 PEX11AO75192 247 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 MICAL2O94851 1124 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 KRT19P08727 400 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 IQCF3P0C7M6 154 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 CXCL8P10145 99 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 PCK1P35558 622 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ELK3P41970 407 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 BASP1P80723 227 aaKnown RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 PTPN11Q06124 597 aaPredicted RBP14.9□□□□□ -0.02
LIG1-202ENST00000427526 LAMC2Q13753 1193 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ANKRD20A2Q5SQ80 823 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ANKRD20A1Q5TYW2 823 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ANKRD20A3Q5VUR7 823 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 DPP9Q86TI2 863 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 LONP2Q86WA8 852 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 EXOC8Q8IYI6 725 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 SMYD3Q9H7B4 428 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 SYNCQ9H7C4 482 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 RNPEPL1Q9HAU8 725 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 ZFP69BQ9UJL9 534 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.9□□□□□ -0.02
LIG1-202ENST00000427526 CHMP2BQ9UQN3 213 aa14.9□□□□□ -0.02
LIG1-202ENST00000427526 TCRBV9S1A1TA0A576 114 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 KIF3CO14782 793 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 CILPO75339 1184 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 RNF8O76064 485 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 SLC18A2Q05940 514 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 MMRN1Q13201 1228 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 KCNJ11Q14654 390 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms