RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 GPAT2Q6NUI2 795 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TRIM65Q6PJ69 517 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CRELD2Q6UXH1 353 aaPredicted RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 DHRSXQ8N5I4 330 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 AENQ8WTP8 325 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TCF7L2Q9NQB0 619 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CHST12Q9NRB3 414 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 ABCB10Q9NRK6 738 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 LOC102724428A0A0B4J2F2 783 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 P4HA2O15460 535 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 SIK1P57059 783 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 KCNJ2P63252 427 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 HPCAP84074 193 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 FAM98BQ52LJ0 330 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CHMP1BQ7LBR1 199 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 UNC45BQ8IWX7 931 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TCP10LQ8TDR4 215 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 VPS33AQ96AX1 596 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CCDC126Q96EE4 140 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 ATP6V1HQ9UI12 483 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 AKT1P31749 480 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 MAGEA10P43363 369 aaPredicted RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 DGKDQ16760 1214 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 DENND5BQ6ZUT9 1274 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 SLC44A2Q8IWA5 706 aaPredicted RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 RNF112Q9ULX5 631 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 SLCO1B7G3V0H7 640 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 STIP1P31948 543 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 GTF2H1P32780 548 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 NNMTP40261 264 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CAPZA2P47755 286 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 PDK3Q15120 406 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 USP39Q53GS9 565 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 SWT1Q5T5J6 900 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 YTHDF3Q7Z739 585 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 EID3Q8N140 333 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 POC5Q8NA72 575 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 FOPNLQ96NB1 174 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 FBXO40Q9UH90 709 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 POLG2Q9UHN1 485 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TPRKBQ9Y3C4 175 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 HS6ST1O60243 411 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CBFA2T3O75081 653 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 MAP3K6O95382 1288 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 GSTM1P09488 218 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CACNB3P54284 484 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 MTFR1Q15390 333 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF284Q2VY69 593 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 PGS1Q32NB8 556 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TTMPQ5BVD1 217 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TMED8Q6PL24 325 aaPredicted RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 NEK10Q6ZWH5 1172 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TSEN2Q8NCE0 465 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TSPAN14Q8NG11 270 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 SH3TC2Q8TF17 1288 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 DCPSQ96C86 337 aaKnown RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TRIM62Q9BVG3 475 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 IGKV5-2P06315 115 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 KRT77Q7Z794 578 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 STK32CQ86UX6 486 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 ELOA2Q8IYF1 753 aaPredicted RBP12.23□□□□□ -0.45
SYNPO-202ENST00000394243 IGDCC4Q8TDY8 1250 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 ANKRD49Q8WVL7 239 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 TNIP3Q96KP6 325 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 CDRT15Q96T59 188 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 AGAP1Q9UPQ3 857 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 ERVK-7P63135 1459 aa12.23□□□□□ -0.45
SYNPO-202ENST00000394243 NCF1BA6NI72 391 aaPredicted RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 NCF1CA8MVU1 366 aaPredicted RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 LDLRP01130 860 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 PROCP04070 461 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 NCF1P14598 390 aaPredicted RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 YY1P25490 414 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 CSNK2BP67870 215 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 MRPS22P82650 360 aaKnown RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 SAPCD2Q86UD0 394 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 SLC26A11Q86WA9 606 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF75CPQ92670 426 aaPredicted RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 EHD3Q9NZN3 535 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 GMEB1Q9Y692 573 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 ANKARQ7Z5J8 1434 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 RAD17O75943 681 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 PON1P27169 355 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 SHROOM1Q2M3G4 852 aaPredicted RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 NAPEPLDQ6IQ20 393 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 MED15Q96RN5 788 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 RMND5AQ9H871 391 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 DUSP12Q9UNI6 340 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 VWA5AO00534 786 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 CTDNEP1O95476 244 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 ME2P23368 584 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 BMPR2Q13873 1038 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 DGCR6Q14129 220 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 CCDC153Q494R4 210 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 RAB42Q8N4Z0 105 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 FIG4Q92562 907 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 HPS1Q92902 700 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 C9orf16Q9BUW7 83 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 NUAK2Q9H093 628 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 TMEM8AQ9HCN3 771 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms