RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 HPS3Q969F9 1004 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 CNOT6LQ96LI5 555 aaKnown RBP13.74□□□□□ -0.21
SCAF1-202ENST00000595242 TMEM74BQ9NUR3 256 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 CACNA2D2Q9NY47 1150 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 KCND2Q9NZV8 630 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 PCDHB8Q9UN66 801 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 ASB3Q9Y575 518 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 MYH11P35749 1972 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 PCDH15Q96QU1 1955 aa13.74□□□□□ -0.21
SCAF1-202ENST00000595242 USP27XA6NNY8 438 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 OAZ2O95190 189 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 GYPCP04921 128 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 GAP43P17677 238 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 GRM5P41594 1212 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 MARSP56192 900 aaKnown RBP13.73□□□□□ -0.21
SCAF1-202ENST00000595242 C19orf57Q0VDD7 668 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 BMT2Q1RMZ1 405 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 EPM2AIP1Q7L775 607 aaPredicted RBP13.73□□□□□ -0.21
SCAF1-202ENST00000595242 HDDC3Q8N4P3 179 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 EZH1Q92800 747 aaPredicted RBP13.73□□□□□ -0.21
SCAF1-202ENST00000595242 EXOC4Q96A65 974 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 C18orf25Q96B23 403 aaPredicted RBP13.73□□□□□ -0.21
SCAF1-202ENST00000595242 IQCDQ96DY2 449 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 TSG101Q99816 390 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 BAG1Q99933 345 aaPredicted RBP13.73□□□□□ -0.21
SCAF1-202ENST00000595242 TUBGCP2Q9BSJ2 902 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 CCDC94Q9BW85 323 aaPredicted RBP13.73□□□□□ -0.21
SCAF1-202ENST00000595242 SLC46A2Q9BY10 475 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 VPS16Q9H269 839 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 OLFML3Q9NRN5 406 aa13.73□□□□□ -0.21
SCAF1-202ENST00000595242 MBD1Q9UIS9 605 aaPredicted RBP13.73□□□□□ -0.21
SCAF1-202ENST00000595242 HELZP42694 1942 aaKnown RBP13.72□□□□□ -0.21
SCAF1-202ENST00000595242 MYOFQ9NZM1 2061 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 SOAT2O75908 522 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 TPM2P07951 284 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 ARSAP15289 507 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 KCNE1P15382 129 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 GJA4P35212 333 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 NAMPTP43490 491 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 GPR17Q13304 367 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 EDRF1Q3B7T1 1238 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 FIGNQ5HY92 759 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 MIIPQ5JXC2 388 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 DNTTIP2Q5QJE6 756 aaKnown RBP13.72□□□□□ -0.21
SCAF1-202ENST00000595242 ANO7Q6IWH7 933 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 SLC23A3Q6PIS1 610 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 ARMCX6Q7L4S7 300 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 ITIH5Q86UX2 942 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 RASSF3Q86WH2 238 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 SYT12Q8IV01 421 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 PPP1R13BQ96KQ4 1090 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 CEP63Q96MT8 703 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 ERGIC2Q96RQ1 377 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 REEP2Q9BRK0 252 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 KIFC3Q9BVG8 833 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 OXCT2Q9BYC2 517 aaPredicted RBP13.72□□□□□ -0.21
SCAF1-202ENST00000595242 KCTD10Q9H3F6 313 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 SCUBE2Q9NQ36 999 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 TBX20Q9UMR3 447 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 CCL26Q9Y258 94 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 RAXQ9Y2V3 346 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 R3HCC1Q9Y3T6 440 aaKnown RBP13.72□□□□□ -0.21
SCAF1-202ENST00000595242 TIMM13Q9Y5L4 95 aaPredicted RBP13.72□□□□□ -0.21
SCAF1-202ENST00000595242 ANAPC1Q9H1A4 1944 aa13.72□□□□□ -0.21
SCAF1-202ENST00000595242 UBE4BO95155 1302 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TNFRSF10BO14763 440 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TPM1P09493 284 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 EFNA5P52803 228 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 ATXN3P54252 364 aaPredicted RBP13.71□□□□□ -0.21
SCAF1-202ENST00000595242 UBXN1Q04323 297 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 MAN2A1Q16706 1144 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 CEP135Q66GS9 1140 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 CC2D1AQ6P1N0 951 aaPredicted RBP13.71□□□□□ -0.21
SCAF1-202ENST00000595242 CCNI2Q6ZMN8 369 aaPredicted RBP13.71□□□□□ -0.21
SCAF1-202ENST00000595242 C1orf186Q6ZWK4 172 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 LPCAT2Q7L5N7 544 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TMEFF1Q8IYR6 380 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 CMTM8Q8IZV2 173 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TTC9BQ8N6N2 239 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 ATAD1Q8NBU5 361 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 MDGA1Q8NFP4 955 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 MDM1Q8TC05 714 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 SCFD1Q8WVM8 642 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 NACC1Q96RE7 527 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 GTPBP2Q9BX10 602 aaKnown RBP13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TTYH3Q9C0H2 523 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 BHMT2Q9H2M3 363 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 SEL1LQ9UBV2 794 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 ODF2LQ9ULJ1 636 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TRAF3IP3Q9Y228 551 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TNFSF13BQ9Y275 285 aa13.71□□□□□ -0.21
SCAF1-202ENST00000595242 TSC2P49815 1807 aa13.71□□□□□ -0.22
SCAF1-202ENST00000595242 NPHP3-ACAD11A0A0J9YXS1 232 aa13.7□□□□□ -0.22
SCAF1-202ENST00000595242 MTMR11A4FU01 709 aa13.7□□□□□ -0.22
SCAF1-202ENST00000595242 GOLGA6L9A6NEM1 432 aa13.7□□□□□ -0.22
SCAF1-202ENST00000595242 CYSRT1A8MQ03 144 aa13.7□□□□□ -0.22
SCAF1-202ENST00000595242 M0QZQ0 153 aa13.7□□□□□ -0.22
SCAF1-202ENST00000595242 EIF3DO15371 548 aaKnown RBP eCLIP13.7□□□□□ -0.22
SCAF1-202ENST00000595242 MAP3K13O43283 966 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms