RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TMEM59LQ9UK28 342 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 FGF18O76093 207 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 URODP06132 367 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 BMPR1AP36894 532 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 TKTL1P51854 596 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 RNASE9P60153 205 aaKnown RBP14.38□□□□□ -0.11
CCDC40-209ENST00000573474 MRPS5P82675 430 aaKnown RBP14.38□□□□□ -0.11
CCDC40-209ENST00000573474 ADIGQ0VDE8 80 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 SLC26A9Q7LBE3 791 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 ARCQ7LC44 396 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 VPS52Q8N1B4 723 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 NIPA2Q8N8Q9 360 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 SPPL2BQ8TCT7 592 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 KHSRPQ92945 711 aaKnown RBP eCLIP14.38□□□□□ -0.11
CCDC40-209ENST00000573474 C8orf48Q96LL4 319 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 OSBPL9Q96SU4 736 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 L2HGDHQ9H9P8 463 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 CNGB3Q9NQW8 809 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 ASNSD1Q9NWL6 643 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 PACSIN2Q9UNF0 486 aaPredicted RBP14.38□□□□□ -0.11
CCDC40-209ENST00000573474 SSX2IPQ9Y2D8 614 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 RWDD3Q9Y3V2 267 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 MRFAP1Q9Y605 127 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 CDY1Q9Y6F8 540 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 VWA8A3KMH1 1905 aa14.38□□□□□ -0.11
CCDC40-209ENST00000573474 MYH10P35580 1976 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 MTMR11A4FU01 709 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 F8VP50 259 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 C2CD2LO14523 706 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 TRIM66O15016 1216 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 SART1O43290 800 aaKnown RBP14.37□□□□□ -0.11
CCDC40-209ENST00000573474 GLI1P08151 1106 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 PSMA2P25787 234 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 CTNNA2P26232 953 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 OR1D2P34982 312 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 RABGGTBP53611 331 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 OGDHQ02218 1023 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 CREMQ03060 361 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 ADCY1Q08828 1119 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 ACAP1Q15027 740 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 PTPROQ16827 1216 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 C9orf50Q5SZB4 431 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 RNF19BQ6ZMZ0 732 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 SCN4BQ8IWT1 228 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 SCML4Q8N228 414 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 UBL4BQ8N7F7 174 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 ATAD1Q8NBU5 361 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 CD101Q93033 1021 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 PBKQ96KB5 322 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 RNPC3Q96LT9 517 aaKnown RBP14.37□□□□□ -0.11
CCDC40-209ENST00000573474 PGLYRP2Q96PD5 576 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 CLSTN3Q9BQT9 956 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 ULBP1Q9BZM6 244 aa14.37□□□□□ -0.11
CCDC40-209ENST00000573474 MRPL17Q9NRX2 175 aaKnown RBP14.37□□□□□ -0.11
CCDC40-209ENST00000573474 CCDC66A2RUB6 948 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 LCHNA4D1U4 455 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 C2CD4BA6NLJ0 364 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 CES2O00748 559 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 DPYSL4O14531 572 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 DDX3YO15523 660 aaKnown RBP14.36□□□□□ -0.11
CCDC40-209ENST00000573474 ADAM12O43184 909 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 HSF2BPO75031 334 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 SRGAP2O75044 1071 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 GRAP2O75791 330 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 ZBED1O96006 694 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 HAPLN1P10915 354 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-209ENST00000573474 PDGFRAP16234 1089 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 GPD1P21695 349 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 NDUFV1P49821 464 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 ZNF143P52747 638 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-209ENST00000573474 DAOAP59103 153 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 ROR1Q01973 937 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 ZNF252P-AS1Q0IIN9 211 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 SHHQ15465 462 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 TAF5Q15542 800 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 WHAMMP3Q1A5X7 153 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 TPGS2Q68CL5 300 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 PM20D1Q6GTS8 502 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 GPRIN1Q7Z2K8 1008 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 TNS4Q8IZW8 715 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 EMC1Q8N766 993 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 KLHL23Q8NBE8 558 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 CLEC4CQ8WTT0 213 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 RXFP2Q8WXD0 754 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 IRGQQ8WZA9 623 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 PIWIL1Q96J94 861 aaKnown RBP14.36□□□□□ -0.11
CCDC40-209ENST00000573474 CNPY3Q9BT09 278 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 PLVAPQ9BX97 442 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.36□□□□□ -0.11
CCDC40-209ENST00000573474 FNIP2Q9P278 1114 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 LZTS1Q9Y250 596 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 USTQ9Y2C2 406 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 PCDHA3Q9Y5H8 950 aa14.36□□□□□ -0.11
CCDC40-209ENST00000573474 WDR27A2RRH5 827 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 LINC01553A4QN01 128 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 KCNK3O14649 394 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 TNFRSF10BO14763 440 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 LILRB3O75022 631 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 VNN2O95498 520 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 USP17L7P0C7H9 530 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms