RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 STOML1Q9UBI4 398 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 ZNF646O15015 1829 aaPredicted RBP17.85■□□□□ 0.45
VPS53-215ENST00000573028 SIGLEC16A6NMB1 481 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 E5RJQ4 531 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 TOM1L1O75674 476 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 ERBB2P04626 1255 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 ENO1P06733 434 aaKnown RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 ATP6V1C1P21283 382 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 YWHAEP62258 255 aaKnown RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 MXRA7P84157 204 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 ROR1Q01973 937 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 FAM102AQ5T9C2 384 aaPredicted RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 SNX30Q5VWJ9 437 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 CDHR3Q6ZTQ4 885 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 UBR7Q8N806 425 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 NLRP4Q96MN2 994 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 PPP1R16BQ96T49 567 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 TRIM56Q9BRZ2 755 aaKnown RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 TEX13BQ9BXU2 312 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 MRPL4Q9BYD3 311 aaKnown RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 MAFBQ9Y5Q3 323 aaPredicted RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 INO80B-WBP1J3KQ70 363 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 FCHO1O14526 889 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 CSDE1O75534 798 aaKnown RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 PIGRP01833 764 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 LINGO3P0C6S8 592 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 SERPINB4P48594 390 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 TMEM154Q6P9G4 183 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 ARMC2Q8NEN0 867 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 ALKBH8Q96BT7 664 aaKnown RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 INO80BQ9C086 356 aaPredicted RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 ZNF518BQ9C0D4 1074 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 NMUR2Q9GZQ4 415 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 GPATCH2LQ9NWQ4 482 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 TAS2R1Q9NYW7 299 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 PPARGC1AQ9UBK2 798 aaKnown RBP17.84■□□□□ 0.45
VPS53-215ENST00000573028 HMGXB4Q9UGU5 601 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 USP18Q9UMW8 372 aa17.84■□□□□ 0.45
VPS53-215ENST00000573028 CCDC189A1A4V9 331 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 NDC80O14777 642 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 PRKCBP05771 671 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 YY1P25490 414 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 HMGB2P26583 209 aaKnown RBP17.83■□□□□ 0.45
VPS53-215ENST00000573028 TMPRSS15P98073 1019 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 CDK16Q00536 496 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 TNFAIP1Q13829 316 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 POLNQ7Z5Q5 900 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 ZNF280CQ8ND82 737 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 APOPT1Q96IL0 206 aa17.83■□□□□ 0.45
VPS53-215ENST00000573028 F5H423 210 aaPredicted RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 H3BRJ5 948 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 TRAFD1O14545 582 aaPredicted RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 TNNC2P02585 160 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 PTPN7P35236 360 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 ASPAP45381 313 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 STAT5BP51692 787 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 KDSRQ06136 332 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 THOC5Q13769 683 aaKnown RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 UCMAQ8WVF2 138 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 FAM161BQ96MY7 647 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 SRPK1Q96SB4 655 aaKnown RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 ASCC2Q9H1I8 757 aaPredicted RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 KCNK13Q9HB14 408 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 DLGAP2Q9P1A6 1054 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 SPDYE5A6NIY4 337 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 M0QYV0 167 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 CYB561D2O14569 222 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 KCNN4O15554 427 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 RASA2Q15283 850 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 C15orf59Q2T9L4 293 aaPredicted RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 ARID3BQ8IVW6 561 aaPredicted RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 ENDOVQ8N8Q3 282 aaKnown RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 NIPA2Q8N8Q9 360 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 ADPGKQ9BRR6 497 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 DHRS4Q9BTZ2 278 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 NRBP2Q9NSY0 501 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 LNPEPQ9UIQ6 1025 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 MAD1L1Q9Y6D9 718 aa17.83■□□□□ 0.44
VPS53-215ENST00000573028 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.83■□□□□ 0.44
VPS53-215ENST00000573028 APOC4-APOC2K7ER74 178 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 OGTO15294 1046 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 B4GALT5O43286 388 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 UGT1A9O60656 530 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 APOC2P02655 101 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 APRTP07741 180 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 DPEP1P16444 411 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 PGM1P36871 562 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 TMEM192Q8IY95 271 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 OXNAD1Q96HP4 312 aaPredicted RBP17.82■□□□□ 0.44
VPS53-215ENST00000573028 TWNKQ96RR1 684 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 UGT1A7Q9HAW7 530 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 UGT1A10Q9HAW8 530 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 UGT1A8Q9HAW9 530 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 SSU72Q9NP77 194 aaKnown RBP17.82■□□□□ 0.44
VPS53-215ENST00000573028 MTO1Q9Y2Z2 717 aaKnown RBP17.82■□□□□ 0.44
VPS53-215ENST00000573028 B2RBV5 119 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 MSCO60682 206 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 KLC1Q07866 573 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 ZNF667Q5HYK9 610 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 ZNF398Q8TD17 642 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms