RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 CNOT6LQ96LI5 555 aaKnown RBP12.12□□□□□ -0.47
CLN3-226ENST00000567160 RBSNQ9H1K0 784 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 MAGEC2Q9UBF1 373 aaPredicted RBP12.12□□□□□ -0.47
CLN3-226ENST00000567160 ASB3Q9Y575 518 aa12.12□□□□□ -0.47
CLN3-226ENST00000567160 PI4KAP42356 2102 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 SMIM28A0A1B0GU29 152 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 UPK3BL1B0FP48 263 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 PATE3B3GLJ2 98 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 KCNJ18B7U540 433 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 UPK3BL2E5RIL1 263 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 MEFVO15553 781 aaPredicted RBP12.11□□□□□ -0.47
CLN3-226ENST00000567160 CAPNS1P04632 268 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 KRT13P13646 458 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 WEE1P30291 646 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 DPP6P42658 865 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 MTIF2P46199 727 aaKnown RBP12.11□□□□□ -0.47
CLN3-226ENST00000567160 WNT7BP56706 349 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 PPP2R3AQ06190 1150 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 SPAG1Q07617 926 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 CYP24A1Q07973 514 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 SCAPQ12770 1279 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 HNRNPDQ14103 355 aaKnown RBP12.11□□□□□ -0.47
CLN3-226ENST00000567160 KCNJ12Q14500 433 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 DMC1Q14565 340 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 SLC10A6Q3KNW5 377 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 TRIM61Q5EBN2 209 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 STXBP5Q5T5C0 1151 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 GPR158Q5T848 1215 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 RNF19BQ6ZMZ0 732 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 IRF2BP1Q8IU81 584 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 BRSK2Q8IWQ3 736 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 HDDC3Q8N4P3 179 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 CCDC26Q8TAB7 109 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 PLEKHO2Q8TD55 490 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 TMEM174Q8WUU8 243 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 PIGKQ92643 395 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 CCDC127Q96BQ5 260 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 LRRC3BQ96PB8 259 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 LRRC3Q9BY71 257 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 OXCT2Q9BYC2 517 aaPredicted RBP12.11□□□□□ -0.47
CLN3-226ENST00000567160 HSD3B7Q9H2F3 369 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 ATXN3LQ9H3M9 355 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 CCDC86Q9H6F5 360 aaKnown RBP12.11□□□□□ -0.47
CLN3-226ENST00000567160 PDE11AQ9HCR9 933 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 ARMCX3Q9UH62 379 aaPredicted RBP12.11□□□□□ -0.47
CLN3-226ENST00000567160 SCN1AP35498 2009 aa12.11□□□□□ -0.47
CLN3-226ENST00000567160 LACTBL1A8MY62 500 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 GNA14O95837 355 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 EGFP01133 1207 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 TRIM49P0CI25 452 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 TRIM49CP0CI26 452 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 DLATP10515 647 aaKnown RBP12.1□□□□□ -0.47
CLN3-226ENST00000567160 CDK11BP21127 795 aaKnown RBP12.1□□□□□ -0.47
CLN3-226ENST00000567160 RPL9P32969 192 aaKnown RBP12.1□□□□□ -0.47
CLN3-226ENST00000567160 MAPK8P45983 427 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 DHPSP49366 369 aaPredicted RBP12.1□□□□□ -0.47
CLN3-226ENST00000567160 TPM4P67936 248 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 C19orf57Q0VDD7 668 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 BFSP1Q12934 665 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 RUNX3Q13761 415 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 PSMD6Q15008 389 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 DCAF17Q5H9S7 520 aaPredicted RBP12.1□□□□□ -0.47
CLN3-226ENST00000567160 CDKAL1Q5VV42 579 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 TCERG1LQ5VWI1 586 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 LMBRD2Q68DH5 695 aaPredicted RBP12.1□□□□□ -0.47
CLN3-226ENST00000567160 PIP4P1Q86T03 277 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 ITIH5Q86UX2 942 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 CHCHD4Q8N4Q1 142 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 TSTD1Q8NFU3 115 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 RPLP0P6Q8NHW5 317 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 FAM84AQ96KN4 292 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 SUSD3Q96L08 255 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 GCNAQ96QF7 691 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 MMRN2Q9H8L6 949 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 GKN1Q9NS71 199 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 ZMYM5Q9UJ78 669 aa12.1□□□□□ -0.47
CLN3-226ENST00000567160 ZNF638Q14966 1978 aaKnown RBP12.1□□□□□ -0.47
CLN3-226ENST00000567160 TTC26A0AVF1 554 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 MAPK13O15264 365 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 IL18RAPO95256 599 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 PRAMEF12O95522 483 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 ATP1A3P13637 1013 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 GABRR2P28476 465 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 VAMP7P51809 220 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 ATXN3P54252 364 aaPredicted RBP12.09□□□□□ -0.47
CLN3-226ENST00000567160 DLG4P78352 724 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 SEMA3BQ13214 749 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 TCP11X2Q5H9J9 407 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 JADE1Q6IE81 842 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 INTS8Q75QN2 995 aaKnown RBP12.09□□□□□ -0.47
CLN3-226ENST00000567160 RAB44Q7Z6P3 723 aaPredicted RBP12.09□□□□□ -0.47
CLN3-226ENST00000567160 BEST2Q8NFU1 509 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 ADAM32Q8TC27 787 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 PSMG2Q969U7 264 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 FNBP1Q96RU3 617 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 CGRRF1Q99675 332 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 P2RY13Q9BPV8 354 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 TASP1Q9H6P5 420 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 METTL14Q9HCE5 456 aaKnown RBP12.09□□□□□ -0.47
CLN3-226ENST00000567160 SCUBE2Q9NQ36 999 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms