RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	ZXDB	P98169	803 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	PSG6	Q00889	435 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	AMOT	Q4VCS5	1084 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	DGKK	Q5KSL6	1271 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	DPY19L3	Q6ZPD9	716 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	CAND1	Q86VP6	1230 aa	Known RBP	3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	MMP21	Q8N119	569 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	SIRT6	Q8N6T7	355 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	RSPRY1	Q96DX4	576 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	ZPBP	Q9BS86	351 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	KRTAP4-4	Q9BYR3	166 aa		3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	TRMT13	Q9NUP7	481 aa	Known RBP	3.58	□□□□□ -1.84
SPG11-222	ENST00000560435	hCG_1984214	I3L0E3	225 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	TYR	P14679	529 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	KRTAP5-9	P26371	169 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	SATB1	Q01826	763 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	EXOSC9	Q06265	439 aa	Known RBP	3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	MYO1E	Q12965	1108 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	MTX1	Q13505	466 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	LARS2	Q15031	903 aa	Known RBP	3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	SEC23B	Q15437	767 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	EMC10	Q5UCC4	262 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	IZUMO1	Q8IYV9	350 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	ABRA	Q8N0Z2	381 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	B4GALNT2	Q8NHY0	566 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	IGFBPL1	Q8WX77	278 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	FAM167A	Q96KS9	214 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	CXorf36	Q9H7Y0	433 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	MRPS17	Q9Y2R5	130 aa	Known RBP	3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	PLEKHM1	Q9Y4G2	1056 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	MRFAP1	Q9Y605	127 aa		3.57	□□□□□ -1.84
SPG11-222	ENST00000560435	UNC5C	O95185	931 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	GRP	P07492	148 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	TNFRSF1B	P20333	461 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	ADORA2A	P29274	412 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	AWAT1	Q58HT5	328 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	TMEM63B	Q5T3F8	832 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	ATG9B	Q674R7	924 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	NECAB2	Q7Z6G3	386 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	UBE2Q1	Q7Z7E8	422 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	LMBRD1	Q9NUN5	540 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	SLC5A4	Q9NY91	659 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	SELENON	Q9NZV5	590 aa		3.56	□□□□□ -1.84
SPG11-222	ENST00000560435	VNN1	O95497	513 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	APEH	P13798	732 aa	Known RBP	3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	GK	P32189	559 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	ASIC2	Q16515	512 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	LY6K	Q17RY6	165 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	TMEM65	Q6PI78	240 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	LINC01465	Q8N7H1	131 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	PCSK9	Q8NBP7	692 aa	Known RBP	3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	BRIX1	Q8TDN6	353 aa	Known RBP	3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	NR4A3	Q92570	626 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	ZNF479	Q96JC4	524 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	FAM84B	Q96KN1	310 aa	Predicted RBP	3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	TMEM204	Q9BSN7	226 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	MRPL44	Q9H9J2	332 aa	Known RBP	3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	SEMA4B	Q9NPR2	832 aa	Predicted RBP	3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	MCM8	Q9UJA3	840 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	MAFF	Q9ULX9	164 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	PCDHA1	Q9Y5I3	950 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	SNX14	Q9Y5W7	946 aa		3.55	□□□□□ -1.84
SPG11-222	ENST00000560435	IGLV5-39	A0A0G2JS06	123 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	FOXN3	O00409	490 aa	Predicted RBP	3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	CES2	O00748	559 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	FTL	P02792	175 aa	Predicted RBP	3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	FGF2	P09038	288 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	MYBL2	P10244	700 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	CYP2C9	P11712	490 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	HSD3B2	P26439	372 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	SUMO2	P61956	95 aa	Known RBP	3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	HSF1	Q00613	529 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	LMAN2	Q12907	356 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	ABCB5	Q2M3G0	1257 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	SLC9C1	Q4G0N8	1177 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	C9orf50	Q5SZB4	431 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	RANBP10	Q6VN20	620 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	NOP9	Q86U38	636 aa	Known RBP	3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	RFX6	Q8HWS3	928 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	MEIS3	Q99687	375 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	FAM126A	Q9BYI3	521 aa	Predicted RBP	3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	TMEM8A	Q9HCN3	771 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	PNPO	Q9NVS9	261 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	GAR1	Q9NY12	217 aa	Known RBP	3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	XPR1	Q9UBH6	696 aa		3.54	□□□□□ -1.84
SPG11-222	ENST00000560435	PRSS47	A8MTI9	375 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435		M0R3H8	397 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	DTNB	O60941	627 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	PMPCB	O75439	489 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	GAS8-AS1	O95177	125 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	NGFR	P08138	427 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	HDC	P19113	662 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	DGKE	P52429	567 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	COPB1	P53618	953 aa	Known RBP	3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	WNT3	P56703	355 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	SOX8	P57073	446 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	PCBP2	Q15366	365 aa	Known RBP eCLIP	3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	ZNF750	Q32MQ0	723 aa		3.53	□□□□□ -1.84
SPG11-222	ENST00000560435	SYDE2	Q5VT97	1194 aa		3.53	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms