RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 MRGPRX1Q96LB2 322 aa5.68□□□□□ -1.5
VPS13C-208ENST00000559119 HOMER2Q9NSB8 354 aa5.68□□□□□ -1.5
VPS13C-208ENST00000559119 ZNF580Q9UK33 172 aa5.68□□□□□ -1.5
VPS13C-208ENST00000559119 CACNA1IQ9P0X4 2223 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 OFD1O75665 1012 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 PHKG2P15735 406 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 MLC1Q15049 377 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 RBMS2Q15434 407 aaKnown RBP5.67□□□□□ -1.5
VPS13C-208ENST00000559119 ATAT1Q5SQI0 421 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 ZNF783Q6ZMS7 281 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 OSR1Q8TAX0 266 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-208ENST00000559119 BPIFB1Q8TDL5 484 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 TMEM171Q8WVE6 324 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 PPP2R3CQ969Q6 453 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 C17orf80Q9BSJ5 609 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 ASIC5Q9NY37 505 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 MTMR4Q9NYA4 1195 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 ANKRD6Q9Y2G4 727 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 COL4A3BPQ9Y5P4 624 aa5.67□□□□□ -1.5
VPS13C-208ENST00000559119 ADAM10O14672 748 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 PF4V1P10720 104 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 RAB1AP62820 205 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 PLA1AQ53H76 456 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 RAB11FIP4Q86YS3 637 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 SPARTQ8N0X7 666 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 MPP5Q8N3R9 675 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 MS4A7Q9GZW8 240 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-208ENST00000559119 TCF7L1Q9HCS4 588 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 PCDH12Q9NPG4 1184 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 IP6K2Q9UHH9 426 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 CNTNAP2Q9UHC6 1331 aa5.66□□□□□ -1.5
VPS13C-208ENST00000559119 A0A087WWL8 130 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 A0A088AWK7 358 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 PMPCBO75439 489 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 CT47B1P0C2W7 299 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-208ENST00000559119 PRF1P14222 555 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 GKP32189 559 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 PSG6Q00889 435 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 TWIST1Q15672 202 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 BRDTQ58F21 947 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-208ENST00000559119 CERCAMQ5T4B2 595 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 C10orf25Q5T742 122 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 IFIT1BQ5T764 474 aaKnown RBP5.65□□□□□ -1.5
VPS13C-208ENST00000559119 TMEM65Q6PI78 240 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 OR6B3Q8NGW1 331 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 RAPGEF4Q8WZA2 1011 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 GBA2Q9HCG7 927 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-208ENST00000559119 AASDHPPTQ9NRN7 309 aa5.65□□□□□ -1.5
VPS13C-208ENST00000559119 IGKV2D-30A0A075B6S6 120 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 MT-CO3P00414 261 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 PRKAR1BP31321 381 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 CCKARP32238 428 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 COPB1P53618 953 aaKnown RBP5.64□□□□□ -1.51
VPS13C-208ENST00000559119 LINC00205P59089 165 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 CTBP1Q13363 440 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 CCNIQ14094 377 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 DENND2CQ68D51 928 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 DAAM2Q86T65 1068 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 ZNF398Q8TD17 642 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 KBTBD7Q8WVZ9 684 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 ADGRE3Q9BY15 652 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 TRIM54Q9BYV2 358 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 FOXP1Q9H334 677 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-208ENST00000559119 USP22Q9UPT9 525 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 CADPSQ9ULU8 1353 aa5.64□□□□□ -1.51
VPS13C-208ENST00000559119 A0A1W2PPL8 197 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 FAM90A10PA6NDY2 464 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 BTN3A1O00481 513 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 NPR1P16066 1061 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 HOXD9P28356 352 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-208ENST00000559119 NEK2P51955 445 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 HTRA4P83105 476 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-208ENST00000559119 ZNF91Q05481 1191 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 LMAN2Q12907 356 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 ZNF267Q14586 743 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-208ENST00000559119 TRIM71Q2Q1W2 868 aaKnown RBP5.63□□□□□ -1.51
VPS13C-208ENST00000559119 TMEM63BQ5T3F8 832 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 PTCHD4Q6ZW05 846 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 DENND1CQ8IV53 801 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 ZCRB1Q8TBF4 217 aaKnown RBP5.63□□□□□ -1.51
VPS13C-208ENST00000559119 VCPIP1Q96JH7 1222 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 SNX15Q9NRS6 342 aa5.63□□□□□ -1.51
VPS13C-208ENST00000559119 DRG1Q9Y295 367 aaKnown RBP5.63□□□□□ -1.51
VPS13C-208ENST00000559119 LY6G6EA0A0G2JKS1 128 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 AP1G1O43747 822 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 TBC1D4O60343 1298 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 NCLP19338 710 aaKnown RBP5.62□□□□□ -1.51
VPS13C-208ENST00000559119 HTR1BP28222 390 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 MTHFSP49914 203 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 BCAT1P54687 386 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 SLC13A2Q13183 592 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 RAB32Q13637 225 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 PTCHD3Q3KNS1 767 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 ANO7Q6IWH7 933 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 PNISRQ8TF01 805 aaKnown RBP5.62□□□□□ -1.51
VPS13C-208ENST00000559119 DIS3LQ8TF46 1054 aaKnown RBP5.62□□□□□ -1.51
VPS13C-208ENST00000559119 MAP4K1Q92918 833 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 SIGLEC11Q96RL6 698 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-208ENST00000559119 LPAR3Q9UBY5 353 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms