RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 LMAN2Q12907 356 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 RUNX3Q13761 415 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 TPD52L1Q16890 204 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-230ENST00000557427 FILIP1LQ4L180 1135 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 RIN3Q8TB24 985 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 NOC3LQ8WTT2 800 aaKnown RBP13.39□□□□□ -0.27
SHMT2-230ENST00000557427 PGLYRP2Q96PD5 576 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 ATXN3LQ9H3M9 355 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 EBF3Q9H4W6 596 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 CCDC86Q9H6F5 360 aaKnown RBP13.39□□□□□ -0.27
SHMT2-230ENST00000557427 PLEKHA5Q9HAU0 1116 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 EXOC1Q9NV70 894 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 TUBGCP4Q9UGJ1 667 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 MAFFQ9ULX9 164 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 KALRNO60229 2985 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 TTC26A0AVF1 554 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 LRRC10BA6NIK2 292 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 GCNT3O95395 438 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 PIGRP01833 764 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 OR4Q2P0C623 313 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 WEE1P30291 646 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 ABCD1P33897 745 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 DHPSP49366 369 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-230ENST00000557427 GUCY2FP51841 1108 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 PPP2R3AQ06190 1150 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 DUSP4Q13115 394 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 ENOX2Q16206 610 aaKnown RBP13.38□□□□□ -0.27
SHMT2-230ENST00000557427 KYAT1Q16773 422 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 SPECC1LQ69YQ0 1117 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 SLFN12LQ6IEE8 588 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 CCNI2Q6ZMN8 369 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-230ENST00000557427 UNC13DQ70J99 1090 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 DNAJB7Q7Z6W7 309 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-230ENST00000557427 SYCP3Q8IZU3 236 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 ANKRD20A12PQ8NF67 263 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 KCNN1Q92952 543 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 ACCSQ96QU6 501 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 ST6GALNAC4Q9H4F1 302 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 AGO2Q9UKV8 859 aaKnown RBP13.38□□□□□ -0.27
SHMT2-230ENST00000557427 PCDHB13Q9Y5F0 798 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 TNRC6BQ9UPQ9 1833 aaKnown RBP13.38□□□□□ -0.27
SHMT2-230ENST00000557427 MYO16Q9Y6X6 1858 aa13.38□□□□□ -0.27
SHMT2-230ENST00000557427 GON4LQ3T8J9 2241 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 KIAA1549LQ6ZVL6 1849 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 BICDL2A1A5D9 508 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 FAM189A1O60320 539 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 SOAT2O75908 522 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 PRPF6O94906 941 aaKnown RBP13.37□□□□□ -0.27
SHMT2-230ENST00000557427 CPB1P15086 417 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 ARSAP15289 507 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 DRD1P21728 446 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 GABRR2P28476 465 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 PBX1P40424 430 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 CYP4F8P98187 520 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 C19orf57Q0VDD7 668 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 PSMD2Q13200 908 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 USP39Q53GS9 565 aaKnown RBP13.37□□□□□ -0.27
SHMT2-230ENST00000557427 DNTTIP2Q5QJE6 756 aaKnown RBP13.37□□□□□ -0.27
SHMT2-230ENST00000557427 ZNF280DQ6N043 979 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 RASSF3Q86WH2 238 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 CCDC65Q8IXS2 484 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 TTC9BQ8N6N2 239 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 FRMD1Q8N878 549 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 POMGNT1Q8WZA1 660 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 HPS3Q969F9 1004 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 SUSD3Q96L08 255 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 SLC46A2Q9BY10 475 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 THAP9Q9H5L6 903 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 SCUBE2Q9NQ36 999 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 SEL1LQ9UBV2 794 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 CPSF3Q9UKF6 684 aaKnown RBP13.37□□□□□ -0.27
SHMT2-230ENST00000557427 EXOC7Q9UPT5 735 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 CCL26Q9Y258 94 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 SLC27A5Q9Y2P5 690 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 PI4KAP42356 2102 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 PTPRDP23468 1912 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 ADAMTS9Q9P2N4 1935 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 ITIH6Q6UXX5 1313 aa13.37□□□□□ -0.27
SHMT2-230ENST00000557427 MYH11P35749 1972 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 URB1O60287 2271 aaKnown RBP13.36□□□□□ -0.27
SHMT2-230ENST00000557427 CD59P13987 128 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 PLA2G2AP14555 144 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 EEF1GP26641 437 aaKnown RBP13.36□□□□□ -0.27
SHMT2-230ENST00000557427 ADSSP30520 456 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 PTGER3P43115 390 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 CASP5P51878 434 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 EPHB3P54753 998 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 ZBTB6Q15916 424 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 ZNF423Q2M1K9 1284 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 HSP90AA4PQ58FG1 418 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 TCP11X2Q5H9J9 407 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 JADE1Q6IE81 842 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 TTI2Q6NXR4 508 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 SLC23A3Q6PIS1 610 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 FOXR2Q6PJQ5 311 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 PNPLA1Q8N8W4 532 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 ZSWIM2Q8NEG5 633 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 ADAMTS14Q8WXS8 1223 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 PSMG2Q969U7 264 aa13.36□□□□□ -0.27
SHMT2-230ENST00000557427 CAMK1GQ96NX5 476 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms