RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RASSF5Q8WWW0 418 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 KRT35Q92764 455 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 SEMA6BQ9H3T3 888 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 WHRNQ9P202 907 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 TNS3Q68CZ2 1445 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 ARPC4-TTLL3A0A0A6YYG9 625 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 ARHGEF35A5YM69 484 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 ARHGEF15O94989 841 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 ARL4CP56559 192 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 GJA9P57773 515 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 ESRRGP62508 458 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 PRKCEQ02156 737 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 NAALADL2Q58DX5 795 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 PPM1LQ5SGD2 360 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 ARL6IP4Q66PJ3 421 aaKnown RBP14.36□□□□□ -0.11
SHMT2-226ENST00000556825 CENPPQ6IPU0 288 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 PLEKHA7Q6IQ23 1121 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 ALKBH5Q6P6C2 394 aaKnown RBP14.36□□□□□ -0.11
SHMT2-226ENST00000556825 CCDC137Q6PK04 289 aaKnown RBP14.36□□□□□ -0.11
SHMT2-226ENST00000556825 KSR2Q6VAB6 950 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 CAND1Q86VP6 1230 aaKnown RBP14.36□□□□□ -0.11
SHMT2-226ENST00000556825 TTC13Q8NBP0 860 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 CATSPER1Q8NEC5 780 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 DCLK3Q9C098 648 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 NMUR2Q9GZQ4 415 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 KBTBD4Q9NVX7 518 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 NINJ2Q9NZG7 142 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 SENP1Q9P0U3 644 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 SEPT3Q9UH03 358 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 DENND2AQ9ULE3 1009 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 SCAF8Q9UPN6 1271 aaKnown RBP14.36□□□□□ -0.11
SHMT2-226ENST00000556825 GNEQ9Y223 722 aaKnown RBP14.36□□□□□ -0.11
SHMT2-226ENST00000556825 CAMTA1Q9Y6Y1 1673 aa14.36□□□□□ -0.11
SHMT2-226ENST00000556825 A0A087WZG4 1122 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 A0A1B0GTW7 788 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 BTBD11A6QL63 1104 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 RNMTO43148 476 aaKnown RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 NUAK1O60285 661 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 GPC4O75487 556 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 CA4P22748 312 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 CTBSQ01459 385 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 CTTNQ14247 550 aaKnown RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 TMEM67Q5HYA8 995 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 SLFN13Q68D06 897 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 RHBDF2Q6PJF5 856 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 PRR23CQ6ZRP0 262 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 IGFN1Q86VF2 1251 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 ZNF34Q8IZ26 560 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 CABLES1Q8TDN4 633 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 SLC16A10Q8TF71 515 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 RAPGEF4Q8WZA2 1011 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 LSM14BQ9BX40 385 aaKnown RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 NEK6Q9HC98 313 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 ARPP21Q9UBL0 812 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 VANGL2Q9ULK5 521 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 GAKO14976 1311 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 SPATA31A3Q5VYP0 1347 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 ARHGAP42A6NI28 874 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 POLR1CO15160 346 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 MSI1O43347 362 aaKnown RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 H6PDO95479 791 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 H2AFZP0C0S5 128 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 PTGS2P35354 604 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 ARL1P40616 181 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 NDST2P52849 883 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 COX10Q12887 443 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 PDK1Q15118 436 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 ANO4Q32M45 955 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 ANKRD26P1Q6NSI1 321 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 KIAA1841Q6NSI8 718 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 FAM122CQ6P4D5 195 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 CENPUQ71F23 418 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 H2AFVQ71UI9 128 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 ZNF571Q7Z3V5 609 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 CPNE9Q8IYJ1 553 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 RTKN2Q8IZC4 609 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 TRIT1Q9H3H1 467 aaKnown RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 RPF2Q9H7B2 306 aaKnown RBP14.35□□□□□ -0.11
SHMT2-226ENST00000556825 STMN3Q9NZ72 180 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 RWDD3Q9Y3V2 267 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 SLC4A4Q9Y6R1 1079 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 FLT1P17948 1338 aa14.35□□□□□ -0.11
SHMT2-226ENST00000556825 TNPO2O14787 897 aaKnown RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 CCNT1O60563 726 aaKnown RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 PEX14O75381 377 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 DLDP09622 509 aaKnown RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 GPD2P43304 727 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 NR4A2P43354 598 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 MLLT6P55198 1093 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 STX1BP61266 288 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TAGLNQ01995 201 aaKnown RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 ZNF211Q13398 564 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TCIRG1Q13488 830 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 C6orf52Q5T4I8 152 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 BRINP3Q76B58 766 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 SETD3Q86TU7 594 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TMEM126BQ8IUX1 230 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 KSR1Q8IVT5 923 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 CCDC105Q8IYK2 499 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 CLIP4Q8N3C7 705 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms