RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 IFRD2Q12894 506 aaPredicted RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 PPFIA1Q13136 1202 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 ITGA7Q13683 1181 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 CTTNQ14247 550 aaKnown RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 KARSQ15046 597 aaKnown RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 CR1LQ2VPA4 569 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 MTERF2Q49AM1 385 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 EMC4Q5J8M3 183 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 SPECC1Q5M775 1068 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 CEP57L1Q8IYX8 460 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 SYT2Q8N9I0 419 aaPredicted RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 MCPH1Q8NEM0 835 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 ENGASEQ8NFI3 743 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 LARP4BQ92615 738 aaKnown RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 RAD54LQ92698 747 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 CCDC43Q96MW1 224 aaKnown RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 C11orf84Q9BUA3 381 aaPredicted RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 TNMDQ9H2S6 317 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 RNPEPQ9H4A4 650 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 GOLPH3LQ9H4A5 285 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 LMBRD1Q9NUN5 540 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 SIRPGQ9P1W8 387 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 WRAP73Q9P2S5 460 aaPredicted RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 PFDN2Q9UHV9 154 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 HOOK1Q9UJC3 728 aaKnown RBP6.34□□□□□ -1.39
SCAF11-213ENST00000550629 PCDHB4Q9Y5E5 795 aa6.34□□□□□ -1.39
SCAF11-213ENST00000550629 A0A087X0B3 334 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 IGKV6-21A0A0C4DH24 114 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 A0A1B0GVL5 298 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 C17orf102A2RUQ5 167 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 ARVCFO00192 962 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 MAFO75444 373 aaPredicted RBP6.33□□□□□ -1.4
SCAF11-213ENST00000550629 ZNF202O95125 648 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 C22orf31O95567 290 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 PLA2G4BP0C869 781 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 SMIM10L2AP0DMW4 78 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 SMIM10L2BP0DMW5 78 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 INSRRP14616 1297 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 CYP11B2P19099 503 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 DNM2P50570 870 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 CDK7P50613 346 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 SLC12A3P55017 1021 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 PSMC6P62333 389 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 ADAM17P78536 824 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 CDC42EP1Q00587 391 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 RBL2Q08999 1139 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 ZRSR1Q15695 479 aaKnown RBP6.33□□□□□ -1.4
SCAF11-213ENST00000550629 LONRF3Q496Y0 759 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 XKR9Q5GH70 373 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 TAF2Q6P1X5 1199 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 KRBA2Q6ZNG9 492 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 FAM43BQ6ZT52 329 aaPredicted RBP6.33□□□□□ -1.4
SCAF11-213ENST00000550629 ANKRD33Q7Z3H0 272 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 KCNK18Q7Z418 384 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 NECAB2Q7Z6G3 386 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 UBE2Q1Q7Z7E8 422 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 RPAINQ86UA6 219 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 SERINC5Q86VE9 423 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 ZC3H18Q86VM9 953 aaKnown RBP6.33□□□□□ -1.4
SCAF11-213ENST00000550629 CARFQ8N187 725 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 PIGOQ8TEQ8 1089 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 LMBR1Q8WVP7 490 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 KIFAP3Q92845 792 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 ABHD8Q96I13 439 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 CEP170P1Q96L14 293 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 CEP89Q96ST8 783 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 GTPBP4Q9BZE4 634 aaKnown RBP6.33□□□□□ -1.4
SCAF11-213ENST00000550629 BHMT2Q9H2M3 363 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 DHX33Q9H6R0 707 aaKnown RBP6.33□□□□□ -1.4
SCAF11-213ENST00000550629 STARD7Q9NQZ5 370 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 BLOC1S4Q9NUP1 217 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 KCNG1Q9UIX4 513 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 FRMPD3Q5JV73 1810 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 CENPFP49454 3210 aa6.33□□□□□ -1.4
SCAF11-213ENST00000550629 GRIN2DO15399 1336 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 SMIM35A0A1B0GVV1 85 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 E9PMD0 336 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 CAND2O75155 1236 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 MARK3P27448 753 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 TMOD1P28289 359 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 ABCD1P33897 745 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 POLGP54098 1239 aaPredicted RBP6.32□□□□□ -1.4
SCAF11-213ENST00000550629 NPEPPSP55786 919 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 ITGA1P56199 1179 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 GPR85P60893 370 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 SERINC3Q13530 473 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 MXD4Q14582 209 aaPredicted RBP6.32□□□□□ -1.4
SCAF11-213ENST00000550629 EMC2Q15006 297 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 MARCH8Q5T0T0 291 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 PLA2G4FQ68DD2 849 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 RINT1Q6NUQ1 792 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 MTHFD1LQ6UB35 978 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 C1orf186Q6ZWK4 172 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 GPBP1Q86WP2 473 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 NME8Q8N427 588 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 PDILTQ8N807 584 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 CNNM3Q8NE01 707 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 PIP4K2CQ8TBX8 421 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 TCP11Q8WWU5 503 aa6.32□□□□□ -1.4
SCAF11-213ENST00000550629 DHX58Q96C10 678 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms