RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CCM2LQ9NUG4 571 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TXLNGQ9NUQ3 528 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM140Q9NV12 185 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 UCKL1Q9NWZ5 548 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJC28Q9NX36 388 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZSCAN32Q9NX65 697 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 DACT1Q9NYF0 836 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAMSAP3Q9P1Y5 1249 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF17Q9P2E2 1029 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 IFT80Q9P2H3 777 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 FRMD4AQ9P2Q2 1039 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NFKBIL1Q9UBC1 381 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ORC3Q9UBD5 711 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 AASSQ9UDR5 926 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 GIMAP2Q9UG22 337 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 RGS17Q9UGC6 210 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDC23Q9UJX2 597 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDC42EP3Q9UKI2 254 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZHX1Q9UKY1 873 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 OGDHLQ9ULD0 1010 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMCC3Q9ULS5 477 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 C19orf53Q9UNZ5 99 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PA2G4Q9UQ80 394 aaKnown RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 POLHQ9Y253 713 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM5Q9Y2B1 443 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SIK3Q9Y2K2 1263 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 STXBP5LQ9Y2K9 1186 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 COQ6Q9Y2Z9 468 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PAXBP1Q9Y5B6 917 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHB6Q9Y5E3 794 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHGB6Q9Y5F9 930 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAGED1Q9Y5V3 778 aaPredicted RBP0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX13Q9Y5W8 968 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 HCFC2Q9Y5Z7 792 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 IKBKGQ9Y6K9 419 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 NUMBLQ9Y6R0 609 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 LMTK3Q96Q04 1460 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 OBSCNQ5VST9 7968 aa0.65□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF804BA4D1E1 1349 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SOS1Q07889 1333 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPTORQ8N122 1335 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABCC9O60706 1549 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADAMTS20P59510 1910 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PPC4 97 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PPH5 198 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PPL8 197 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LCHNA4D1U4 455 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PI4KAP2A4QPH2 592 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC154A6NI56 674 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSPY2A6NKD2 308 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM64CA6NLI5 447 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLCA1A8K7I4 914 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LGALS16A8MUM7 142 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TISP43B9A030 160 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 B9A039 149 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PI4K2BG5E9Z4 385 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF561-AS1K7EIQ3 104 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYO1FO00160 1098 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMD9O00233 223 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARNTLO00327 626 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 QSOX1O00391 747 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 IPO5O00410 1097 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYT5O00445 386 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACKR2O00590 384 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DVL2O14641 736 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NDC80O14777 642 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMA7O14818 248 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DSCR3O14972 297 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPC1O15118 1278 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MPPED1O15442 326 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 THAP12O43422 761 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HTRA2O43464 458 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SGTAO43765 313 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT86O43790 486 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DOK2O60496 412 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRAMEF4O60810 478 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM20BO75063 409 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM127O75204 238 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 B3GALNT1O75752 331 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM155BO75949 473 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT37O76014 449 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 JTBO76095 146 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 URI1O94763 535 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP1O94782 785 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALDH1A2O94788 518 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 INMTO95050 263 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CSPG5O95196 566 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTN3O95197 1032 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NDUFA10O95299 355 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPANK1O95872 356 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYF2O95926 243 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBX18O95935 607 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 IGHDP01880 384 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FTLP02792 175 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNTTP04053 509 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANXA1P04083 346 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GNAI2P04899 355 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 IGKV2-30P06310 120 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 POLBP06746 335 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANXA2P07355 339 aaKnown RBP0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms