RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MAPK6Q16659 721 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ANKRD27Q96NW4 1050 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 MPHOSPH6Q99547 160 aaKnown RBP14.04□□□□□ -0.16
USP42-206ENST00000479544 DRC3Q9H069 523 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ADNPQ9H2P0 1102 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 TASP1Q9H6P5 420 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 COPS7BQ9H9Q2 264 aaPredicted RBP14.04□□□□□ -0.16
USP42-206ENST00000479544 PLA2G4CQ9UP65 541 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 TSC22D4Q9Y3Q8 395 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 PRR5-ARHGAP8B1AHC4 643 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 P4HA2O15460 535 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 PEX11AO75192 247 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 MLH1P40692 756 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ARHGAP8P85298 464 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 KRT76Q01546 638 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ATP1A4Q13733 1029 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 SLC26A11Q86WA9 606 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ZNF212Q9UDV6 495 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 NUB1Q9Y5A7 615 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 E7ENQ6 273 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 PSTPIP1O43586 416 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ADRB2P07550 413 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 AMPD1P23109 780 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 PCYT1AP49585 367 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 JAK3P52333 1124 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ADARP55265 1226 aaKnown RBP14.04□□□□□ -0.16
USP42-206ENST00000479544 NME5P56597 212 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 CRADDP78560 199 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 GABPAQ06546 454 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 NME3Q13232 169 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 SPDYCQ5MJ68 293 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 C1orf186Q6ZWK4 172 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 RNF149Q8NC42 400 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 MXRA8Q9BRK3 442 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 RNF146Q9NTX7 359 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 TSR3Q9UJK0 312 aaKnown RBP14.04□□□□□ -0.16
USP42-206ENST00000479544 TMEM59LQ9UK28 342 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 NFAT5O94916 1531 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 APOL1O14791 398 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 ECE2O60344 883 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 FAM155BO75949 473 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 LDHAP00338 332 aaKnown RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 PEX6Q13608 980 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 BAATQ14032 418 aaPredicted RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 PARP6Q2NL67 630 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 SEMA4DQ92854 862 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 L3MBTL3Q96JM7 780 aaPredicted RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 PAIP1Q9H074 479 aaKnown RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 BFARQ9NZS9 450 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 NYAP2Q9P242 653 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 AKAP12Q02952 1782 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 FSCN2O14926 492 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 HSPA8P11142 646 aaKnown RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 SPP2Q13103 211 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 RC3H1Q5TC82 1133 aaKnown RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 MFSD5Q6N075 450 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 MARK2Q7KZI7 788 aaKnown RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 EGFL6Q8IUX8 553 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 SP8Q8IXZ3 490 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 RBM15BQ8NDT2 890 aaKnown RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 ASAP3Q8TDY4 903 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 ZBTB45Q96K62 511 aaPredicted RBP14.03□□□□□ -0.16
USP42-206ENST00000479544 CYB561D2O14569 222 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 LYNP07948 512 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 GLRA2P23416 452 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 ADORA2BP29275 332 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 ECHS1P30084 290 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 SHMT1P34896 483 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 GALK1P51570 392 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 ZNF606Q8WXB4 792 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 MTMR12Q9C0I1 747 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 CCDC134Q9H6E4 229 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 FBXO40Q9UH90 709 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 SLC39A10Q9ULF5 831 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 NCANO14594 1321 aa14.03□□□□□ -0.16
USP42-206ENST00000479544 SLIT3O75094 1523 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 C2CD2LO14523 706 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 MEIS2O14770 477 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 KDM1AO60341 852 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 CSPG5O95196 566 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 RARRES1P49788 294 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 CYP2R1Q6VVX0 501 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 RBM44Q6ZP01 1051 aaKnown RBP14.02□□□□□ -0.16
USP42-206ENST00000479544 FAM160B2Q86V87 743 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 ZNF513Q8N8E2 541 aaPredicted RBP14.02□□□□□ -0.16
USP42-206ENST00000479544 NETO2Q8NC67 525 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 MASTLQ96GX5 879 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 KREMEN1Q96MU8 473 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 PHF12Q96QT6 1004 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 PDGFDQ9GZP0 370 aaPredicted RBP14.02□□□□□ -0.16
USP42-206ENST00000479544 TAS2R1Q9NYW7 299 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 CCND2P30279 289 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 Q3C1V9 767 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 RWDD4Q6NW29 188 aaKnown RBP14.02□□□□□ -0.16
USP42-206ENST00000479544 PPP1R2P3Q6NXS1 205 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 ZNF669Q96BR6 464 aaPredicted RBP14.02□□□□□ -0.16
USP42-206ENST00000479544 TAAR1Q96RJ0 339 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 ECSITQ9BQ95 431 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 KCNMB3Q9NPA1 279 aa14.02□□□□□ -0.16
USP42-206ENST00000479544 TM9SF1O15321 606 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms