RNA–Protein interactions for RNA: ENST00000398793.6

TOP3B-202, Transcript of DNA topoisomerase III beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3B, Length 3,107 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-202ENST00000398793 CAVIN3Q969G5 261 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 RBM41Q96IZ5 413 aaKnown RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 PLEKHG4BQ96PX9 1271 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 DPH5Q9H2P9 285 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 KDM4CQ9H3R0 1056 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 FAM153AQ9UHL3 310 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 NFU1Q9UMS0 254 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 LRRD1A4D1F6 860 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 HMGB1P1B2RPK0 211 aaPredicted RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 LIN7AO14910 233 aaPredicted RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 LUC7L3O95232 432 aaKnown RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 FGGP02679 453 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 HNRNPH3P31942 346 aaKnown RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 GNL1P36915 607 aaPredicted RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 GPC5P78333 572 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 CUL3Q13618 768 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 BYSLQ13895 437 aaKnown RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 FAM102AQ5T9C2 384 aaPredicted RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 KCNV2Q8TDN2 545 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 HSPH1Q92598 858 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 ALG3Q92685 438 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 SNX27Q96L92 541 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 TMPRSS4Q9NRS4 437 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 RBM12Q9NTZ6 932 aaKnown RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 TMEM39AQ9NV64 488 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 PCDHGA4Q9Y5G9 962 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 GON4LQ3T8J9 2241 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 ZSCAN9O15535 394 aaPredicted RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 EN2P19622 333 aaPredicted RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 GRM5P41594 1212 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 RAD23BP54727 409 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 MAP3K7CLP57077 242 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 MYBPC2Q14324 1141 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 TAF11Q15544 211 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 IQCKQ8N0W5 287 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 GALNT15Q8N3T1 639 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 SLAIN1Q8ND83 568 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 KLHDC9Q8NEP7 349 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 FAM193BQ96PV7 902 aaPredicted RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 RSAD1Q9HA92 442 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 METTL5Q9NRN9 209 aaKnown RBP13.79□□□□□ -0.2
TOP3B-202ENST00000398793 BLOC1S6Q9UL45 172 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 LRFN2Q9ULH4 789 aa13.79□□□□□ -0.2
TOP3B-202ENST00000398793 E5RJQ4 531 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 TRAPPC3O43617 180 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 BEST1O76090 585 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 PTPN11Q06124 597 aaPredicted RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 C8orf74Q6P047 294 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 TAX1BP1Q86VP1 789 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 SLC4A11Q8NBS3 891 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 SPATA4Q8NEY3 305 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 C1orf54Q8WWF1 131 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 HHIPL1Q96JK4 782 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 ZMYND8Q9ULU4 1186 aaPredicted RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 COQ4Q9Y3A0 265 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 NR2E3Q9Y5X4 410 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 MYBPHLA2RUH7 354 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 GPR182O15218 404 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 NBNO60934 754 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 MICAL2O94851 1124 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 HSPA1AP0DMV8 641 aaKnown RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 HSPA1BP0DMV9 641 aaKnown RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 NRLP54845 237 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 LILRA4P59901 499 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 NFIL3Q16649 462 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 PTPN20Q4JDL3 420 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 FAM133BQ5BKY9 247 aaKnown RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 HP1BP3Q5SSJ5 553 aaPredicted RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 APPL2Q8NEU8 664 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 DDX1Q92499 740 aaKnown RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 EDEM1Q92611 657 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 PRCCQ92733 491 aaPredicted RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 SENP8Q96LD8 212 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 CERS4Q9HA82 394 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 AMFRQ9UKV5 643 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 C2CD2Q9Y426 696 aa13.78□□□□□ -0.2
TOP3B-202ENST00000398793 BZW2Q9Y6E2 419 aaKnown RBP13.78□□□□□ -0.2
TOP3B-202ENST00000398793 CHD9Q3L8U1 2897 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 TBKBP1A7MCY6 615 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 MAP3K13O43283 966 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 CSF2RAP15509 400 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 TFE3P19532 575 aaPredicted RBP13.77□□□□□ -0.2
TOP3B-202ENST00000398793 FECHP22830 423 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 RFC1P35251 1148 aaPredicted RBP13.77□□□□□ -0.2
TOP3B-202ENST00000398793 CARSP49589 748 aaKnown RBP13.77□□□□□ -0.2
TOP3B-202ENST00000398793 POLE2P56282 527 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 PLCB3Q01970 1234 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 TMEM176AQ96HP8 235 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 DDX43Q9NXZ2 648 aaKnown RBP13.77□□□□□ -0.2
TOP3B-202ENST00000398793 SLC27A5Q9Y2P5 690 aa13.77□□□□□ -0.2
TOP3B-202ENST00000398793 PODXLO00592 558 aa13.77□□□□□ -0.21
TOP3B-202ENST00000398793 DDHD2O94830 711 aa13.77□□□□□ -0.21
TOP3B-202ENST00000398793 CYP3A5P20815 502 aa13.77□□□□□ -0.21
TOP3B-202ENST00000398793 ITGB8P26012 769 aa13.77□□□□□ -0.21
TOP3B-202ENST00000398793 TIGD5Q53EQ6 642 aa13.77□□□□□ -0.21
TOP3B-202ENST00000398793 ANKRD20A2Q5SQ80 823 aa13.77□□□□□ -0.21
TOP3B-202ENST00000398793 ANKRD20A1Q5TYW2 823 aa13.77□□□□□ -0.21
TOP3B-202ENST00000398793 ANKRD20A3Q5VUR7 823 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms