RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CDY2AQ9Y6F7 541 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 GRIN2DO15399 1336 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 CASTOR2A6NHX0 329 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 AKR1A1P14550 325 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 THPOP40225 353 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 PURAQ00577 322 aaKnown RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 FAXCQ5TGI0 409 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 CPLX4Q7Z7G2 160 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 UNC45BQ8IWX7 931 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 ST3GAL5Q9UNP4 418 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 PFKMP08237 780 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 GNAT1P11488 350 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 CHN1P15882 459 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 VCPP55072 806 aaKnown RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 LMNB2Q03252 620 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 IFRD2Q12894 506 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 C6orf118Q5T5N4 469 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 RNF187Q5TA31 235 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 WSCD1Q658N2 575 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 APBA2Q99767 749 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 OSBPL7Q9BZF2 842 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 DHX35Q9H5Z1 703 aaKnown RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 PLEKHA5Q9HAU0 1116 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 SPC25Q9HBM1 224 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 PAPSS1O43252 624 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 TTC4O95801 387 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 TRUB2O95900 331 aaKnown RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 MAGEA4P43358 317 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 ZNF143P52747 638 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 PDIA2Q13087 525 aaKnown RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 TRPV1Q8NER1 839 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 P3H4Q92791 437 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 ARHGEF2Q92974 986 aaKnown RBP11.66□□□□□ -0.54
TCOF1-203ENST00000394269 CCT8L2Q96SF2 557 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 CNPY3Q9BT09 278 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 NINJ2Q9NZG7 142 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 NR2E3Q9Y5X4 410 aa11.66□□□□□ -0.54
TCOF1-203ENST00000394269 MBLAC1A4D2B0 266 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CYB561D2O14569 222 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 HGSO14964 777 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 POMCP01189 267 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 GHRP10912 638 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 TAF6P49848 677 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 SKOR1P84550 965 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CDC42EP1Q00587 391 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CA9Q16790 459 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 BBS9Q3SYG4 887 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CCDC14Q49A88 953 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 LRRC38Q5VT99 294 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CTU1Q7Z7A3 348 aaKnown RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 SRRM1Q8IYB3 904 aaKnown RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CCDC13Q8IYE1 715 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 ADGRF2Q8IZF7 708 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 WNT8BQ93098 351 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 MCRS1Q96EZ8 462 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 TPX2Q9ULW0 747 aaKnown RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 SCN1AP35498 2009 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 TRIM66O15016 1216 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 MCF2LO15068 1137 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CAPN15O75808 1086 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 VIMP08670 466 aaKnown RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 CTCFP49711 727 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 LILRA4P59901 499 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 INCA1Q0VD86 236 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 PTGISQ16647 500 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 GDF6Q6KF10 455 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 FAM228AQ86W67 206 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 ALLCQ8N6M5 410 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 GDAP1Q8TB36 358 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 ADAM32Q8TC27 787 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 KATNAL1Q9BW62 490 aa11.65□□□□□ -0.54
TCOF1-203ENST00000394269 MRPL42Q9Y6G3 142 aaKnown RBP11.65□□□□□ -0.54
TCOF1-203ENST00000394269 C2CD4BA6NLJ0 364 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 SHOX2O60902 331 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 CD4P01730 458 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 NUDT17P0C025 328 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 HOXD8P13378 290 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 CRYBB1P53674 252 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 NME3Q13232 169 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 AUHQ13825 339 aaKnown RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 TMED2Q15363 201 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 DCAF6Q58WW2 860 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 NLRP14Q86W24 1093 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 FAM131BQ86XD5 332 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 SMG8Q8ND04 991 aaKnown RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 TRIB2Q92519 343 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 VRTNQ9H8Y1 702 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 INTS9Q9NV88 658 aaKnown RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 TRIP12Q14669 1992 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 KLRC2P26717 231 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 NDUFV1P49821 464 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 SLC6A3Q01959 620 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 PRKCZQ05513 592 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 SMAD1Q15797 465 aaKnown RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 AGBL2Q5U5Z8 902 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 ANKRD22Q5VYY1 191 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 DSTYKQ6XUX3 929 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 SYDE1Q6ZW31 735 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 TRMT10CQ7L0Y3 403 aaKnown RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 PRMT1Q99873 361 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms