RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ZNF398Q8TD17 642 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 ZNF384Q8TF68 577 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 TCF12Q99081 682 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 MARCH7Q9H992 704 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 UGT1A7Q9HAW7 530 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 UGT1A10Q9HAW8 530 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 UGT1A8Q9HAW9 530 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 DCP1AQ9NPI6 582 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-201ENST00000328923 CCDC177Q9NQR7 707 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-201ENST00000328923 C6orf203Q9P0P8 240 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-201ENST00000328923 IGSF9Q9P2J2 1179 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 RABGEF1Q9UJ41 708 aa12.35□□□□□ -0.43
SHMT2-201ENST00000328923 ATF5Q9Y2D1 282 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-201ENST00000328923 QSER1Q2KHR3 1735 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 IRS2Q9Y4H2 1338 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 XPO1O14980 1071 aaKnown RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CRTAMO95727 393 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 TTC4O95801 387 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 UCHL3P15374 230 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CHRNB2P17787 502 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ETV3P41162 512 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ZNF200P98182 395 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 PDK1Q15118 436 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 SLC35G1Q2M3R5 365 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 RGS21Q2M5E4 152 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 AAGABQ6PD74 315 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 TXNRD3Q86VQ6 643 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CADM3Q8N126 398 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 C4orf33Q8N1A6 199 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 PRELID2Q8N945 189 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 GIPC2Q8TF65 315 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CAPSLQ8WWF8 208 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 DNAJC19Q96DA6 116 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 POP1Q99575 1024 aaKnown RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 AS3MTQ9HBK9 375 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 DTNAQ9Y4J8 743 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ESYT2A0FGR8 921 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 PODXLO00592 558 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 FCHO1O14526 889 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CDH16O75309 829 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CSPG5O95196 566 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CES1P23141 567 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ETFBP38117 255 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 PEX3P56589 373 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CDK16Q00536 496 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 NR1H3Q13133 447 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 OASLQ15646 514 aaKnown RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 SLC15A2Q16348 729 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 USP41Q3LFD5 358 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 RWDD4Q6NW29 188 aaKnown RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CYP4V2Q6ZWL3 525 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ZBTB46Q86UZ6 589 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 LSMEM1Q8N8F7 131 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 HIPK4Q8NE63 616 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 SGF29Q96ES7 293 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 DCUN1D1Q96GG9 259 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 CCDC138Q96M89 665 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ZNF512Q96ME7 567 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 TMEM120AQ9BXJ8 343 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 AGO2Q9UKV8 859 aaKnown RBP12.34□□□□□ -0.43
SHMT2-201ENST00000328923 EXOC7Q9UPT5 735 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ACTL7BQ9Y614 415 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 SLC30A1Q9Y6M5 507 aa12.34□□□□□ -0.43
SHMT2-201ENST00000328923 ROBO3Q96MS0 1386 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 THAP12O43422 761 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 B4GALT4O60513 344 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 P4HA1P13674 534 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 KRT4P19013 534 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 KDSRQ06136 332 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 KCNH2Q12809 1159 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 LRRC41Q15345 812 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 CALCRLQ16602 461 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 CDONQ4KMG0 1287 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 HERC4Q5GLZ8 1057 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 KRT79Q5XKE5 535 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 BTBD8Q5XKL5 378 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 ZDHHC14Q8IZN3 488 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 RFFLQ8WZ73 363 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 HSPH1Q92598 858 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 PWWP2AQ96N64 755 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 NMUR2Q9GZQ4 415 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 OSGEPQ9NPF4 335 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 TBC1D14Q9P2M4 693 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 AP4B1Q9Y6B7 739 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 SCINQ9Y6U3 715 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 CLOCKO15516 846 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 RSL1D1O76021 490 aaKnown RBP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 SORBS2O94875 1100 aaKnown RBP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 FAM58BPP0C7Q3 252 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 CHRNA3P32297 505 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 IREB2P48200 963 aaKnown RBP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 NAPAP54920 295 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 JAM2P57087 298 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 TJAP1Q5JTD0 557 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 CCDC137Q6PK04 289 aaKnown RBP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 MAMSTRQ6ZN01 415 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 FRMD5Q7Z6J6 570 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 SLC51AQ86UW1 340 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 TRIML2Q8N7C3 387 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms