RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 C12orf50Q8NA57 414 aaPredicted RBP16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 RNF25Q96BH1 459 aaPredicted RBP16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 CASD1Q96PB1 797 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 SLITRK1Q96PX8 696 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 RTP3Q9BQQ7 232 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 TMEM106CQ9BVX2 250 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 TMEM39AQ9NV64 488 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 ZNF446Q9NWS9 450 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 UTP11Q9Y3A2 253 aaKnown RBP16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 TCRBV7S2A1N4TA0A589 114 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 B4GALT3O60512 393 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 TADA2AO75478 443 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 SEC31AO94979 1220 aaKnown RBP16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 FNTAP49354 379 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 MAP3K7CLP57077 242 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 ADIGQ0VDE8 80 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 DEFB128Q7Z7B8 93 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 SIX6OS1Q8N1H7 587 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 ARFGAP1Q8N6T3 406 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 HINFPQ9BQA5 517 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 UBXN6Q9BZV1 441 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 RAB17Q9H0T7 212 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 C11orf49Q9H6J7 331 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 ZWILCHQ9H900 591 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 DNAJB4Q9UDY4 337 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 PCYOX1Q9UHG3 505 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 RASAL2Q9UJF2 1139 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 TBX21Q9UL17 535 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 USP18Q9UMW8 372 aa16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 PRG3Q9Y2Y8 225 aaPredicted RBP16.48■□□□□ 0.23
HERPUD1-201ENST00000300302 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 LRRD1A4D1F6 860 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 FAM187AA6NFU0 413 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 TTI1O43156 1089 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 BEST1O76090 585 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 TJP3O95049 919 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 CLTBP09497 229 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 MIPP30301 263 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 PTPN7P35236 360 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 RFC2P35250 354 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 SIX1Q15475 284 aaPredicted RBP16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 TAF5Q15542 800 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 CCDC14Q49A88 953 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 ATP13A4Q4VNC1 1196 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 TFDP3Q5H9I0 405 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 CCDC137Q6PK04 289 aaKnown RBP16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 EIF1ADQ8N9N8 165 aaKnown RBP16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 KHSRPQ92945 711 aaKnown RBP eCLIP16.47■□□□□ 0.232e-11■■□□□ 13.5
HERPUD1-201ENST00000300302 MYLPFQ96A32 169 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 CFAP57Q96MR6 1250 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 COLEC11Q9BWP8 271 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 LRRC19Q9H756 370 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 KLHL11Q9NVR0 708 aa16.47■□□□□ 0.23
HERPUD1-201ENST00000300302 F8W810 466 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 PI4K2BG5E9Z4 385 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 PRPSAP2O60256 369 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 HSF2BPO75031 334 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 FBXO21O94952 628 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 ALDH2P05091 517 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 PTPN9P43378 593 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 KLF1Q13351 362 aaPredicted RBP16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 IKBKEQ14164 716 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 LLGL1Q15334 1064 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 TCTN1Q2MV58 587 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 TXNRD3NBQ6F5E7 133 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 TRNP1Q6NT89 227 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 SPOCD1Q6ZMY3 1216 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 CCDC105Q8IYK2 499 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 ZDHHC14Q8IZN3 488 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 CRIPAKQ8N1N5 446 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 CLEC4CQ8WTT0 213 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 HEMGNQ9BXL5 484 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 PLEKHA4Q9H4M7 779 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 NRDE2Q9H7Z3 1164 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 PRDM10Q9NQV6 1147 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 PCSK1NQ9UHG2 260 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 SCN5AQ14524 2016 aa16.46■□□□□ 0.23
HERPUD1-201ENST00000300302 SYN3O14994 580 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 TRUB2O95900 331 aaKnown RBP16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 CAPN2P17655 700 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 IL1R2P27930 398 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 COILP38432 576 aaPredicted RBP16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 EPHB4P54760 987 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 MRPS5P82675 430 aaKnown RBP16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 ATP11AP98196 1134 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 CUL1Q13616 776 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 CDO1Q16878 200 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 LRRC26Q2I0M4 334 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 C15orf59Q2T9L4 293 aaPredicted RBP16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 SMTNL2Q2TAL5 461 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 CNKSR3Q6P9H4 555 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 MFSD7Q6UXD7 560 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 C4orf50Q6ZRC1 276 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 HDXQ7Z353 690 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 FAM172AQ8WUF8 416 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 IFT81Q8WYA0 676 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 RAPGEF5Q92565 580 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 PKMYT1Q99640 499 aa16.46■□□□□ 0.22
HERPUD1-201ENST00000300302 SMOQ99835 787 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms