RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 UNC45BQ8IWX7 931 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 ADGRF2Q8IZF7 708 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 DYDC1Q8WWB3 177 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 PAIP2Q9BPZ3 127 aaKnown RBP12.03□□□□□ -0.48
CUX1-202ENST00000292538 NOD1Q9Y239 953 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 NR2E3Q9Y5X4 410 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 EBAG9O00559 213 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 PAPSS1O43252 624 aaPredicted RBP12.02□□□□□ -0.48
CUX1-202ENST00000292538 RBP3P10745 1247 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 CHN1P15882 459 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 ZNF143P52747 638 aaPredicted RBP12.02□□□□□ -0.48
CUX1-202ENST00000292538 INCA1Q0VD86 236 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 CA9Q16790 459 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 CCDC14Q49A88 953 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 CTU1Q7Z7A3 348 aaKnown RBP12.02□□□□□ -0.48
CUX1-202ENST00000292538 TRIB2Q92519 343 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 MCRS1Q96EZ8 462 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 KATNAL1Q9BW62 490 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 NINJ2Q9NZG7 142 aa12.02□□□□□ -0.48
CUX1-202ENST00000292538 CYB561D2O14569 222 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 SHOX2O60902 331 aaPredicted RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 TTC4O95801 387 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 POMCP01189 267 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 GHRP10912 638 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 CTCFP49711 727 aaPredicted RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 TAF6P49848 677 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 CRYBB1P53674 252 aaPredicted RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 SKOR1P84550 965 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 CDC42EP1Q00587 391 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 LMNB2Q03252 620 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 PRKCZQ05513 592 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 IFRD2Q12894 506 aaPredicted RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 PDIA2Q13087 525 aaKnown RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 C6orf118Q5T5N4 469 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 LRRC38Q5VT99 294 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 ALLCQ8N6M5 410 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 SMG8Q8ND04 991 aaKnown RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 P3H4Q92791 437 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 CNPY3Q9BT09 278 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 DHX35Q9H5Z1 703 aaKnown RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 VRTNQ9H8Y1 702 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 SPC25Q9HBM1 224 aa12.02□□□□□ -0.49
CUX1-202ENST00000292538 MRPL42Q9Y6G3 142 aaKnown RBP12.02□□□□□ -0.49
CUX1-202ENST00000292538 LRRC37A2A6NM11 1700 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 PLXNB2O15031 1838 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 C3orf70A6NLC5 250 aaPredicted RBP12.01□□□□□ -0.49
CUX1-202ENST00000292538 C2CD4BA6NLJ0 364 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 MCF2LO15068 1137 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 KLRC2P26717 231 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 MAGEA4P43358 317 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 LILRA4P59901 499 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 NME3Q13232 169 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 UBXN11Q5T124 520 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 RNF187Q5TA31 235 aaPredicted RBP12.01□□□□□ -0.49
CUX1-202ENST00000292538 CCDC13Q8IYE1 715 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 C10orf67Q8IYJ2 551 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 GDAP1Q8TB36 358 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 ADAM32Q8TC27 787 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 CCT8L2Q96SF2 557 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 TPX2Q9ULW0 747 aaKnown RBP12.01□□□□□ -0.49
CUX1-202ENST00000292538 LAMA3Q16787 3333 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 CD4P01730 458 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 NUDT17P0C025 328 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 NDUFV1P49821 464 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 AUHQ13825 339 aaKnown RBP12.01□□□□□ -0.49
CUX1-202ENST00000292538 TMED2Q15363 201 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 ZBTB6Q15916 424 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 PTGISQ16647 500 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 ANKRD22Q5VYY1 191 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 MFSD14CQ5VZR4 134 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 SYDE1Q6ZW31 735 aaPredicted RBP12.01□□□□□ -0.49
CUX1-202ENST00000292538 CPLX4Q7Z7G2 160 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 FAM131BQ86XD5 332 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 SRRM1Q8IYB3 904 aaKnown RBP12.01□□□□□ -0.49
CUX1-202ENST00000292538 NIPA2Q8N8Q9 360 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 KBTBD7Q8WVZ9 684 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 ARHGEF2Q92974 986 aaKnown RBP12.01□□□□□ -0.49
CUX1-202ENST00000292538 PAAF1Q9BRP4 392 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 ADAM7Q9H2U9 754 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 TMPRSS4Q9NRS4 437 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 CNTN3Q9P232 1028 aa12.01□□□□□ -0.49
CUX1-202ENST00000292538 TRIM66O15016 1216 aa12□□□□□ -0.49
CUX1-202ENST00000292538 GABBR2O75899 941 aa12□□□□□ -0.49
CUX1-202ENST00000292538 BEST1O76090 585 aa12□□□□□ -0.49
CUX1-202ENST00000292538 TKTP29401 623 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 SCN1AP35498 2009 aa12□□□□□ -0.49
CUX1-202ENST00000292538 SCNN1GP51170 649 aa12□□□□□ -0.49
CUX1-202ENST00000292538 MAP3K7CLP57077 242 aa12□□□□□ -0.49
CUX1-202ENST00000292538 SLC6A3Q01959 620 aa12□□□□□ -0.49
CUX1-202ENST00000292538 BBS9Q3SYG4 887 aa12□□□□□ -0.49
CUX1-202ENST00000292538 DCAF6Q58WW2 860 aa12□□□□□ -0.49
CUX1-202ENST00000292538 MDH1BQ5I0G3 518 aa12□□□□□ -0.49
CUX1-202ENST00000292538 AGBL2Q5U5Z8 902 aa12□□□□□ -0.49
CUX1-202ENST00000292538 TRMT10CQ7L0Y3 403 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 NLRP14Q86W24 1093 aa12□□□□□ -0.49
CUX1-202ENST00000292538 NT5DC4Q86YG4 428 aa12□□□□□ -0.49
CUX1-202ENST00000292538 SOCS4Q8WXH5 440 aa12□□□□□ -0.49
CUX1-202ENST00000292538 SLCO2A1Q92959 643 aa12□□□□□ -0.49
CUX1-202ENST00000292538 PRMT1Q99873 361 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 EPN3Q9H201 632 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms