RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CDHR5Q9HBB8 845 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 ERAP1Q9NZ08 941 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 KBTBD13C9JR72 458 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 UGT1A9O60656 530 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 EDNRBP24530 442 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 ITIH4Q14624 930 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 MDH1BQ5I0G3 518 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 PPP1R15BQ5SWA1 713 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 ILDR2Q71H61 639 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 PRPF39Q86UA1 669 aaKnown RBP17.38■□□□□ 0.37
VPS54-201ENST00000272322 FAM149B1Q96BN6 582 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 FAM111AQ96PZ2 611 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 DPEP3Q9H4B8 488 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 ZNF395Q9H8N7 513 aaPredicted RBP17.38■□□□□ 0.37
VPS54-201ENST00000272322 UGT1A7Q9HAW7 530 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 UGT1A10Q9HAW8 530 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 UGT1A8Q9HAW9 530 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 DPP3Q9NY33 737 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 C3orf70A6NLC5 250 aaPredicted RBP17.38■□□□□ 0.37
VPS54-201ENST00000272322 GRIA1P42261 906 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 UBR7Q8N806 425 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 SLC35B2Q8TB61 432 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 STRIP2Q9ULQ0 834 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 MFHAS1Q9Y4C4 1052 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 PHIPQ8WWQ0 1821 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 MED7O43513 233 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 HBP1O60381 514 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 ATP6V1G2O95670 118 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 LSM8O95777 96 aaKnown RBP17.38■□□□□ 0.37
VPS54-201ENST00000272322 GPD2P43304 727 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 MORF4L2Q15014 288 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 ZNF618Q5T7W0 954 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 CASC4Q6P4E1 433 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 MAGEB18Q96M61 343 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 OSMRQ99650 979 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 MECRQ9BV79 373 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 C2orf40Q9H1Z8 148 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 DHX35Q9H5Z1 703 aaKnown RBP17.38■□□□□ 0.37
VPS54-201ENST00000272322 PCDH9Q9HC56 1237 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 SLC17A6Q9P2U8 582 aa17.38■□□□□ 0.37
VPS54-201ENST00000272322 PDE4DIPQ5VU43 2346 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 SRRM3A6NNA2 597 aaPredicted RBP17.37■□□□□ 0.37
VPS54-201ENST00000272322 COPS2P61201 443 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 FAAP100Q0VG06 881 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 PPIL6Q8IXY8 311 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 UNC5BQ8IZJ1 945 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 FAM172AQ8WUF8 416 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 PDZD7Q9H5P4 517 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 PTPRHQ9HD43 1115 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 DDX56Q9NY93 547 aaKnown RBP17.37■□□□□ 0.37
VPS54-201ENST00000272322 TUBGCP4Q9UGJ1 667 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 CCDC130P13994 396 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 GMPRP36959 345 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 NUMBP49757 651 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 XRCC4Q13426 336 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 DPYSL3Q14195 570 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 AGAP11Q8TF27 550 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 PTPRN2Q92932 1015 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 ACAP3Q96P50 834 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 TRIM6Q9C030 488 aaPredicted RBP17.37■□□□□ 0.37
VPS54-201ENST00000272322 SEPT10Q9P0V9 454 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 RABGEF1Q9UJ41 708 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 WDR81Q562E7 1941 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 ALOX15BO15296 676 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 ROR1Q01973 937 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 LACTB2Q53H82 288 aaPredicted RBP17.37■□□□□ 0.37
VPS54-201ENST00000272322 DPP9Q86TI2 863 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 SUGP1Q8IWZ8 645 aaKnown RBP17.37■□□□□ 0.37
VPS54-201ENST00000272322 EIF2AQ9BY44 585 aaKnown RBP17.37■□□□□ 0.37
VPS54-201ENST00000272322 PSMC3IPQ9P2W1 217 aaPredicted RBP17.37■□□□□ 0.37
VPS54-201ENST00000272322 GGA2Q9UJY4 613 aa17.37■□□□□ 0.37
VPS54-201ENST00000272322 H3BRB1 525 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 B4GALT4O60513 344 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 CILPO75339 1184 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 C22orf31O95567 290 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 ASMTLO95671 621 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 TRUB2O95900 331 aaKnown RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 NQO1P15559 274 aaKnown RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 ADORA2AP29274 412 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 BCAR1P56945 870 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 GEMIN4P57678 1058 aaKnown RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 SH3D19Q5HYK7 790 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 CTU1Q7Z7A3 348 aaKnown RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 ERO1BQ86YB8 467 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 PYROXD2Q8N2H3 581 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 ANKLE1Q8NAG6 615 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 ZMAT2Q96NC0 199 aaKnown RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 LRRC37BQ96QE4 947 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 TUT1Q9H6E5 874 aaKnown RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 SLC12A4Q9UP95 1085 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 MT-ND3P03897 115 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 ITGAVP06756 1048 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 PYGBP11216 843 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 IGFBP6P24592 240 aaPredicted RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 CPA2P48052 419 aa17.36■□□□□ 0.37
VPS54-201ENST00000272322 CDCA2Q69YH5 1023 aaPredicted RBP17.36■□□□□ 0.37
VPS54-201ENST00000272322 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.36■□□□□ 0.37
VPS54-201ENST00000272322 CCDC78A2IDD5 438 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 SESN3P58005 492 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 MTFR1Q15390 333 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms