RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TCP11X2Q5H9J9 407 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 STXBP5Q5T5C0 1151 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 TANGO2Q6ICL3 276 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 TMEM150AQ86TG1 271 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 CRACR2AQ9BSW2 395 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 TTLL2Q9BWV7 592 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 NDST4Q9H3R1 872 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 CSNK1G1Q9HCP0 422 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 TMEM30AQ9NV96 361 aa21.95■■□□□ 1.1
CLN3-240ENST00000631023 WEE1P30291 646 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 PPP3CCP48454 512 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 MYL5Q02045 173 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 SKOR2Q2VWA4 1001 aaPredicted RBP21.94■■□□□ 1.1
CLN3-240ENST00000631023 TMEM31Q5JXX7 168 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 PPP1R26Q5T8A7 1209 aaPredicted RBP21.94■■□□□ 1.1
CLN3-240ENST00000631023 TRIM65Q6PJ69 517 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 RRAGAQ7L523 313 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 JAKMIP2Q96AA8 810 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 SLITRK1Q96PX8 696 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 COMMD8Q9NX08 183 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 KIAA1257Q9ULG3 409 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 PCDHB4Q9Y5E5 795 aa21.94■■□□□ 1.1
CLN3-240ENST00000631023 PES1O00541 588 aaKnown RBP21.93■■□□□ 1.1
CLN3-240ENST00000631023 TPM2P07951 284 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 MAP3K7CLP57077 242 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 PHLDB3Q6NSJ2 640 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 TMEM270Q6UE05 265 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 MON1AQ86VX9 555 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 ARID3BQ8IVW6 561 aaPredicted RBP21.93■■□□□ 1.1
CLN3-240ENST00000631023 UBR7Q8N806 425 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 MAB21L3Q8N8X9 362 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 SMOQ99835 787 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 SMOC2Q9H3U7 446 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 UBE2TQ9NPD8 197 aaPredicted RBP21.93■■□□□ 1.1
CLN3-240ENST00000631023 TRPM5Q9NZQ8 1165 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 MYO16Q9Y6X6 1858 aa21.93■■□□□ 1.1
CLN3-240ENST00000631023 TMEM221A6NGB7 291 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 M0R296 226 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 DPYSL4O14531 572 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 FCARP24071 287 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 YWHAQP27348 245 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 AVPR1AP37288 418 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 USP46P62068 366 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 SGO2Q562F6 1265 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 ENOSF1Q7L5Y1 443 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 ARHGEF19Q8IW93 802 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 CMTM8Q8IZV2 173 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 ANKRD20A12PQ8NF67 263 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 SLC46A2Q9BY10 475 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 DUSP16Q9BY84 665 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 FANCLQ9NW38 375 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 FBXL21Q9UKT6 434 aa21.92■■□□□ 1.1
CLN3-240ENST00000631023 NARSO43776 548 aaKnown RBP21.91■■□□□ 1.1
CLN3-240ENST00000631023 BEST1O76090 585 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 PAEPP09466 180 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 CD19P15391 556 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 NPR3P17342 541 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 SLC9A1P19634 815 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 VIPR2P41587 438 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 PDE6CP51160 858 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 MFAP3P55082 362 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 SLC8A3P57103 927 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 IFRD2Q12894 506 aaPredicted RBP21.91■■□□□ 1.1
CLN3-240ENST00000631023 MIIPQ5JXC2 388 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 CDKAL1Q5VV42 579 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 ARHGAP17Q68EM7 881 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 CLEC20AQ6ZU45 233 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 PDZD8Q8NEN9 1154 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 DEPDC1BQ8WUY9 529 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 FBXO44Q9H4M3 255 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 PNPLA8Q9NP80 782 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 SLC2A4RGQ9NR83 387 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 WNT16Q9UBV4 365 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 PRR33A8MZF0 331 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 TNFRSF10BO14763 440 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 VDRP11473 427 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 PSMC3P17980 439 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 ACO1P21399 889 aaKnown RBP21.91■■□□□ 1.1
CLN3-240ENST00000631023 PON1P27169 355 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 SLC5A3P53794 718 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 GPC5P78333 572 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 PFKPQ01813 784 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 TAF10Q12962 218 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 ANO6Q4KMQ2 910 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 TXNDC8Q6A555 127 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 MFSD6LQ8IWD5 586 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 ZMIZ2Q8NF64 920 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 KAT5Q92993 513 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 FBXO32Q969P5 355 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 TRMT61BQ9BVS5 477 aaKnown RBP21.91■■□□□ 1.1
CLN3-240ENST00000631023 PLA2G2FQ9BZM2 168 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 OBP2AQ9NY56 170 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 APEX2Q9UBZ4 518 aa21.91■■□□□ 1.1
CLN3-240ENST00000631023 HELZP42694 1942 aaKnown RBP21.9■■□□□ 1.1
CLN3-240ENST00000631023 ZDBF2Q9HCK1 2354 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 TRAV19A0A0A6YYK7 116 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 FAM86C2PA6NEL3 165 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 TADA3O75528 432 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 CFHP08603 1231 aa21.9■■□□□ 1.1
CLN3-240ENST00000631023 PFKLP17858 780 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms