RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ANKRD36BP1Q96IX9 119 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 ACCSQ96QU6 501 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 PI4K2AQ9BTU6 479 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 HAPLN2Q9GZV7 340 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 ZMYND15Q9H091 742 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 KIAA1586Q9HCI6 787 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 C2orf42Q9NWW7 574 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 DDX43Q9NXZ2 648 aaKnown RBP6.74□□□□□ -1.33
CUX1-220ENST00000607092 BCCIPQ9P287 314 aaKnown RBP eCLIP6.74□□□□□ -1.33
CUX1-220ENST00000607092 MAGEC2Q9UBF1 373 aaPredicted RBP6.74□□□□□ -1.33
CUX1-220ENST00000607092 STK17AQ9UEE5 414 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 SUSD2Q9UGT4 822 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 CDH9Q9ULB4 789 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 ZMIZ1Q9ULJ6 1067 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 MYH11P35749 1972 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 GON4LQ3T8J9 2241 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ZNF217O75362 1048 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 TNNC2P02585 160 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ITGB3P05106 788 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ARSAP15289 507 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 NMT1P30419 496 aaKnown RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 DDIT3P35638 169 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 P2RY2P41231 377 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 TNFRSF4P43489 277 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 SLC7A9P82251 487 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 GFPT1Q06210 699 aaPredicted RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 ST3GAL1Q11201 340 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 SLC14A1Q13336 389 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 IL17AQ16552 155 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 DDR2Q16832 855 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ZNF423Q2M1K9 1284 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 C2orf27AQ580R0 203 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 TRIM61Q5EBN2 209 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 LYSMD4Q5XG99 296 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 SDE2Q6IQ49 451 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 SLC23A3Q6PIS1 610 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 DENND5BQ6ZUT9 1274 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ZNF720Q7Z2F6 126 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 LRRTM3Q86VH5 581 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 SCN4BQ8IWT1 228 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ADGRF2Q8IZF7 708 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 SYCP3Q8IZU3 236 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 STKLD1Q8NE28 680 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 OLIG1Q8TAK6 271 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ZCCHC14Q8WYQ9 949 aaKnown RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 OVCA2Q8WZ82 227 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 PIGKQ92643 395 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 CHFRQ96EP1 664 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 SLITRK1Q96PX8 696 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 PNKPQ96T60 521 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 PLIN2Q99541 437 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 DUSP9Q99956 384 aaKnown RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 LRRC27Q9C0I9 530 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 MRPL44Q9H9J2 332 aaKnown RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 OLFML3Q9NRN5 406 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 RBAKQ9NYW8 714 aaPredicted RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 SLC6A14Q9UN76 642 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 L1RE1Q9UN81 338 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 AGAP1Q9UPQ3 857 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 MSRB2Q9Y3D2 182 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 SNX9Q9Y5X1 595 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 WNT6Q9Y6F9 365 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 LAMA1P25391 3075 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 APC2O95996 2303 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ATP8B3O60423 1300 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 NBEAQ8NFP9 2946 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 ASPMQ8IZT6 3477 aa6.73□□□□□ -1.33
CUX1-220ENST00000607092 KIF26AQ9ULI4 1882 aaPredicted RBP6.73□□□□□ -1.33
CUX1-220ENST00000607092 A0A0A0MRY4 1105 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 NPHP3-ACAD11A0A0J9YXS1 232 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 OTOL1A6NHN0 477 aaPredicted RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 GABRDO14764 452 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 OPHN1O60890 802 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 RTN3O95197 1032 aaPredicted RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 KAT7O95251 611 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 SEC24BO95487 1268 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 SYPP08247 313 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 SERPINF2P08697 491 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 KRT19P08727 400 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 PLCG1P19174 1290 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 PDCP20941 246 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 CYP2F1P24903 491 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 POLR2BP30876 1174 aaKnown RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 GRIK1P39086 918 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 NOP14P78316 857 aaKnown RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 SIM1P81133 766 aaPredicted RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 RESTQ13127 1097 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 DHX8Q14562 1220 aaKnown RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 RABEP1Q15276 862 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 DUOXA1Q1HG43 343 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 DUOXA2Q1HG44 320 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 UAP1L1Q3KQV9 507 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 L1TD1Q5T7N2 865 aaKnown RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 TDRD10Q5VZ19 366 aaKnown RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 TCEAL6Q6IPX3 200 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 SLC39A4Q6P5W5 647 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 FAM171BQ6P995 826 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 SV2BQ7L1I2 683 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 PGBD3Q8N328 593 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms