RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 NSFP46459 744 aaKnown RBP12.33□□□□□ -0.44
VRK3-223ENST00000601341 GATMP50440 423 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 RNASE9P60153 205 aaKnown RBP12.33□□□□□ -0.44
VRK3-223ENST00000601341 GNGT1P63211 74 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 CENPCQ03188 943 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 CYP1B1Q16678 543 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 DCAF12L1Q5VU92 463 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 NAA35Q5VZE5 725 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 DUPD1Q68J44 220 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 CD300LGQ6UXG3 332 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 ACOT1Q86TX2 421 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 CRYBG2Q8N1P7 616 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 LRRC43Q8N309 656 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 TMEM35BQ8NCS4 154 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 TOP1MTQ969P6 601 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 ARHGEF26Q96DR7 871 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 HINFPQ9BQA5 517 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 ZSWIM1Q9BR11 485 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 ERP44Q9BS26 406 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 TXLNGYQ9BZA5 131 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 AMACRQ9UHK6 382 aa12.33□□□□□ -0.44
VRK3-223ENST00000601341 O00370 1275 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 TRAPPC3O43617 180 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 B4GALT3O60512 393 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 PHF2O75151 1096 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 DGKIO75912 1065 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 PDGFRBP09619 1106 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 ACRP10323 421 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 LMO2P25791 158 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 NOMO3P69849 1222 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 DR1Q01658 176 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 PAN2Q504Q3 1202 aaKnown RBP12.32□□□□□ -0.44
VRK3-223ENST00000601341 LCLAT1Q6UWP7 414 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 METTL23Q86XA0 190 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 DNAAF5Q86Y56 855 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 PASD1Q8IV76 773 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 BCAS4Q8TDM0 211 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 CPA5Q8WXQ8 436 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 CD101Q93033 1021 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 TRIM11Q96F44 468 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 SUSD3Q96L08 255 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 FMO2Q99518 471 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 TMEM175Q9BSA9 504 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 HTATIP2Q9BUP3 242 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 COLEC11Q9BWP8 271 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 LHX5Q9H2C1 402 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 NRDE2Q9H7Z3 1164 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 CTTNBP2NLQ9P2B4 639 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 DNAJB4Q9UDY4 337 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 COG5Q9UP83 839 aa12.32□□□□□ -0.44
VRK3-223ENST00000601341 TTI1O43156 1089 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 TADA2AO75478 443 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 CYP11A1P05108 521 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 NUDT17P0C025 328 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 MYBL1P10243 752 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 SSTR3P32745 418 aaPredicted RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 CDH5P33151 784 aaPredicted RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 CTNNA1P35221 906 aaKnown RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 MAGEA9P43362 315 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 BRCC3P46736 316 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 WDR5P61964 334 aaKnown RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 FPGSQ05932 587 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 CEP85LQ5SZL2 805 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 PHF13Q86YI8 300 aaPredicted RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 C7orf61Q8IZ16 206 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 C12orf29Q8N999 325 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 HASPINQ8TF76 798 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 SLCO2A1Q92959 643 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 VCPIP1Q96JH7 1222 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 EPN3Q9H201 632 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 RASSF4Q9H2L5 321 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 DDX43Q9NXZ2 648 aaKnown RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 RSPH14Q9UHP6 348 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.31□□□□□ -0.44
VRK3-223ENST00000601341 PRG3Q9Y2Y8 225 aaPredicted RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 NME7Q9Y5B8 376 aa12.31□□□□□ -0.44
VRK3-223ENST00000601341 TIMM13Q9Y5L4 95 aaPredicted RBP12.31□□□□□ -0.44
VRK3-223ENST00000601341 I3L4J1 428 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 NRP1O14786 923 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 DAPK3O43293 454 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 MICAL2O94851 1124 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 FGBP02675 491 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 ITGB1P05556 798 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 TYMPP19971 482 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 PCSK1P29120 753 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 MDH1P40925 334 aaKnown RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 PEX5P50542 639 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 UAP1Q16222 522 aaPredicted RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 SEL1L2Q5TEA6 688 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 ARHGAP17Q68EM7 881 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 OSTM1Q86WC4 334 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 MCOLN2Q8IZK6 566 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 C12orf50Q8NA57 414 aaPredicted RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 B3GALNT2Q8NCR0 500 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 ALG3Q92685 438 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 BADQ92934 168 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 DPEP3Q9H4B8 488 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 AVENQ9NQS1 362 aaPredicted RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 FEZ2Q9UHY8 353 aaPredicted RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 MTUS1Q9ULD2 1270 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms