RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TRIM21P19474 475 aaKnown RBP25.39■■□□□ 1.66
SHMT1-206ENST00000579558 INCA1Q0VD86 236 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 CRYBG2Q8N1P7 616 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 USP13Q92995 863 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-206ENST00000579558 SMARCD1Q96GM5 515 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 ZFYVE19Q96K21 471 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 CEP63Q96MT8 703 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 TTLL2Q9BWV7 592 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 KIF9Q9HAQ2 790 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 TDP1Q9NUW8 608 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 THG1LQ9NWX6 298 aaKnown RBP25.39■■□□□ 1.66
SHMT1-206ENST00000579558 RAB20Q9NX57 234 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 DLGAP2Q9P1A6 1054 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 CCL26Q9Y258 94 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 MRPS17Q9Y2R5 130 aaKnown RBP25.39■■□□□ 1.66
SHMT1-206ENST00000579558 MTF2Q9Y483 593 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-206ENST00000579558 PIAS3Q9Y6X2 628 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 ANAPC1Q9H1A4 1944 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 TRAV19A0A0A6YYK7 116 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 BICDL2A1A5D9 508 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 CCDC130P13994 396 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 CD58P19256 250 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 CAMK4Q16566 473 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 CBWD6Q4V339 395 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 CBWD3Q5JTY5 395 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 CBWD5Q5RIA9 395 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 TTI2Q6NXR4 508 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 PAQR9Q6ZVX9 377 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 FUKQ8N0W3 1084 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 NELL2Q99435 816 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 DUSP9Q99956 384 aaKnown RBP25.38■■□□□ 1.65
SHMT1-206ENST00000579558 OSBPL6Q9BZF3 934 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 METTL14Q9HCE5 456 aaKnown RBP25.38■■□□□ 1.65
SHMT1-206ENST00000579558 TRPM5Q9NZQ8 1165 aa25.38■■□□□ 1.65
SHMT1-206ENST00000579558 MAN2B1O00754 1011 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 AP1G2O75843 785 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 CKMP06732 381 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 GLULP15104 373 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 TARSP26639 723 aaKnown RBP25.37■■□□□ 1.65
SHMT1-206ENST00000579558 PLCB2Q00722 1185 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 IFRD2Q12894 506 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-206ENST00000579558 CCDC40Q4G0X9 1142 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 WDR44Q5JSH3 913 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 FILIP1Q7Z7B0 1213 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 SLC2A14Q8TDB8 520 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 ATOH1Q92858 354 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-206ENST00000579558 TWNKQ96RR1 684 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 KCNK16Q96T55 309 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 NT5C1AQ9BXI3 368 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 DMAP1Q9NPF5 467 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-206ENST00000579558 KRT82Q9NSB4 513 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 FAM49BQ9NUQ9 324 aa25.37■■□□□ 1.65
SHMT1-206ENST00000579558 C2orf78A6NCI8 922 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 SHISA7A6NL88 538 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 USP17L7P0C7H9 530 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 KPNA1P52294 538 aaPredicted RBP25.36■■□□□ 1.65
SHMT1-206ENST00000579558 PAK1Q13153 545 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 ZNF268Q14587 947 aaPredicted RBP25.36■■□□□ 1.65
SHMT1-206ENST00000579558 FOXR2Q6PJQ5 311 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 FRMD5Q7Z6J6 570 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 NUP93Q8N1F7 819 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 ARL14EPQ8N8R7 260 aaPredicted RBP25.36■■□□□ 1.65
SHMT1-206ENST00000579558 C12orf29Q8N999 325 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 TRIML1Q8N9V2 468 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 SLC35C1Q96A29 364 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 FAXDC2Q96IV6 333 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 SLC22A12Q96S37 553 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 CYP2S1Q96SQ9 504 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 FAM86C1Q9NVL1 165 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 KIAA1468Q9P260 1216 aa25.36■■□□□ 1.65
SHMT1-206ENST00000579558 NDRG2Q9UN36 371 aaKnown RBP25.36■■□□□ 1.65
SHMT1-206ENST00000579558 KIF26AQ9ULI4 1882 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-206ENST00000579558 CILPO75339 1184 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 RTN3O95197 1032 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-206ENST00000579558 PPP3CCP48454 512 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 STX17P56962 302 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 TAF10Q12962 218 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 ANGPT1Q15389 498 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 FAM3CQ92520 227 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 SLITRK1Q96PX8 696 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 DNAI2Q9GZS0 605 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 GCNT4Q9P109 453 aa25.35■■□□□ 1.65
SHMT1-206ENST00000579558 NCAM2O15394 837 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 HDCP19113 662 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 YWHAQP27348 245 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 ADORA2BP29275 332 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 PDE6CP51160 858 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 MLLT6P55198 1093 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-206ENST00000579558 TTC8Q8TAM2 541 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 WHAMMQ8TF30 809 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 MSANTD3Q96H12 275 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 C8orf33Q9H7E9 229 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-206ENST00000579558 GKN1Q9NS71 199 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 GTSE1Q9NYZ3 720 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 COQ4Q9Y3A0 265 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 MYH10P35580 1976 aa25.34■■□□□ 1.65
SHMT1-206ENST00000579558 ZNF840PA6NDX5 716 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 ABL1P00519 1130 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 SOX9P48436 509 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 SLC5A3P53794 718 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms