RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 COQ4Q9Y3A0 265 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 PRAMEF12O95522 483 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 CKMP06732 381 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 TBXAS1P24557 533 aaPredicted RBP20.67■□□□□ 0.9
SS18-209ENST00000578595 DDX6P26196 483 aaKnown RBP eCLIP20.67■□□□□ 0.9
SS18-209ENST00000578595 MAP3K7CLP57077 242 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 MCCD1P59942 119 aaPredicted RBP20.67■□□□□ 0.9
SS18-209ENST00000578595 USP46P62068 366 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 HSP90AA4PQ58FG1 418 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 SASS6Q6UVJ0 657 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 BMP8AQ7Z5Y6 402 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 FAM114A1Q8IWE2 563 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 CRYBG2Q8N1P7 616 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 FBXO32Q969P5 355 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 CYFIP2Q96F07 1278 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 CEP295NLQ96MC4 621 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 SLITRK1Q96PX8 696 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 KCNK16Q96T55 309 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 SLC2A4RGQ9NR83 387 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 TMEM30AQ9NV96 361 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 TRPM5Q9NZQ8 1165 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 ZMYM5Q9UJ78 669 aa20.67■□□□□ 0.9
SS18-209ENST00000578595 TRAV19A0A0A6YYK7 116 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 ZNF263O14978 683 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 TADA3O75528 432 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 TMEM150AQ86TG1 271 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 CMTM8Q8IZV2 173 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 NUP93Q8N1F7 819 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 WHAMMQ8TF30 809 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 FAXDC2Q96IV6 333 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 MYRFLQ96LU7 910 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 SLC46A2Q9BY10 475 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 GCNT4Q9P109 453 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 COL4A3Q01955 1670 aa20.66■□□□□ 0.9
SS18-209ENST00000578595 NCANO14594 1321 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 KRBA1A5PL33 1030 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 PES1O00541 588 aaKnown RBP20.65■□□□□ 0.9
SS18-209ENST00000578595 P4HA2O15460 535 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 RTN3O95197 1032 aaPredicted RBP20.65■□□□□ 0.9
SS18-209ENST00000578595 CD19P15391 556 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 YWHAQP27348 245 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 SLC5A3P53794 718 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 MARSP56192 900 aaKnown RBP20.65■□□□□ 0.9
SS18-209ENST00000578595 CCDC183Q5T5S1 534 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 PAQR9Q6ZVX9 377 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 MFSD6LQ8IWD5 586 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 CSGALNACT1Q8TDX6 532 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 IRF7Q92985 503 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 RSPRY1Q96DX4 576 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 TMEM176AQ96HP8 235 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 TBC1D17Q9HA65 648 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 TRPV4Q9HBA0 871 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 MUC6Q6W4X9 2439 aa20.65■□□□□ 0.9
SS18-209ENST00000578595 COL4A2P08572 1712 aa20.64■□□□□ 0.9
SS18-209ENST00000578595 F5P12259 2224 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 ERCC5P28715 1186 aaPredicted RBP20.64■□□□□ 0.89
SS18-209ENST00000578595 VCPP55072 806 aaKnown RBP20.64■□□□□ 0.89
SS18-209ENST00000578595 TAF10Q12962 218 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 MLF2Q15773 248 aaPredicted RBP20.64■□□□□ 0.89
SS18-209ENST00000578595 TPRG1Q6ZUI0 275 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 MON1AQ86VX9 555 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 CELF5Q8N6W0 485 aaKnown RBP20.64■□□□□ 0.89
SS18-209ENST00000578595 BPIFB1Q8TDL5 484 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 SHDQ96IW2 340 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 MED15Q96RN5 788 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 HNRNPABQ99729 332 aaKnown RBP20.64■□□□□ 0.89
SS18-209ENST00000578595 SMOQ99835 787 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 INTS2Q9H0H0 1204 aaKnown RBP20.64■□□□□ 0.89
SS18-209ENST00000578595 THAP9Q9H5L6 903 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 HEBP1Q9NRV9 189 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 PCDHB4Q9Y5E5 795 aa20.64■□□□□ 0.89
SS18-209ENST00000578595 C2orf78A6NCI8 922 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 BEST1O76090 585 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 USP17L7P0C7H9 530 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 PRKCSHP14314 528 aaPredicted RBP20.63■□□□□ 0.89
SS18-209ENST00000578595 RAD23BP54727 409 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 SLC44A4Q53GD3 710 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 PPP1R26Q5T8A7 1209 aaPredicted RBP20.63■□□□□ 0.89
SS18-209ENST00000578595 TMEM270Q6UE05 265 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 RRAGAQ7L523 313 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 ARL14EPQ8N8R7 260 aaPredicted RBP20.63■□□□□ 0.89
SS18-209ENST00000578595 SLC4A11Q8NBS3 891 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 ZFYVE19Q96K21 471 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 CRACR2AQ9BSW2 395 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 TTLL2Q9BWV7 592 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 KIF9Q9HAQ2 790 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 TDP1Q9NUW8 608 aa20.63■□□□□ 0.89
SS18-209ENST00000578595 THG1LQ9NWX6 298 aaKnown RBP20.63■□□□□ 0.89
SS18-209ENST00000578595 PDE6CP51160 858 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 UBXN2BQ14CS0 331 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 STX1AQ16623 288 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 SGO2Q562F6 1265 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 IER5LQ5T953 404 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 CWF19L1Q69YN2 538 aaKnown RBP20.62■□□□□ 0.89
SS18-209ENST00000578595 ASTLQ6HA08 431 aaPredicted RBP20.62■□□□□ 0.89
SS18-209ENST00000578595 CC2D1AQ6P1N0 951 aaPredicted RBP20.62■□□□□ 0.89
SS18-209ENST00000578595 CLEC20AQ6ZU45 233 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 EHBP1Q8NDI1 1231 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 PDZD8Q8NEN9 1154 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 SCAMP5Q8TAC9 235 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms