RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CSPG5O95196 566 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 NCAM1P13591 858 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 BACE1P56817 501 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 AMHR2Q16671 573 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 NIPA1Q7RTP0 329 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 PRUNE1Q86TP1 453 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 CCDC33Q8N5R6 958 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 C4orf32Q8N8J7 132 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 CNPY3Q9BT09 278 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 MRGBPQ9NV56 204 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 RPS6KL1Q9Y6S9 549 aa15.94■□□□□ 0.14
CIITA-204ENST00000570546 TMEM150BA6NC51 233 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 AQP5P55064 265 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 EVX2Q03828 476 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 LAMC2Q13753 1193 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 LBRQ14739 615 aaKnown RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 APOBEC3HQ6NTF7 200 aaKnown RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 CCNJLQ8IV13 435 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 SPIRE2Q8WWL2 714 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 CATSPERBQ9H7T0 1116 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 DCLRE1BQ9H816 532 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 RPS6KA5O75582 802 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 TGM2P21980 687 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 NFKBIAP25963 317 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 PNPLA4P41247 253 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 TAF6P49848 677 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 NUDT2P50583 147 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 FLOT2Q14254 428 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 RASA2Q15283 850 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 PCYOX1LQ8NBM8 494 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 SPDYE1Q8NFV5 336 aaPredicted RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 PABPC5Q96DU9 382 aaKnown RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 AVENQ9NQS1 362 aaPredicted RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 SLC38A7Q9NVC3 462 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 ARHGAP26Q9UNA1 814 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 NCANO14594 1321 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 APOA4P06727 396 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 STAG3L1P0CL83 205 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 CLCN3P51790 818 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 DLG4P78352 724 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 NUP93Q8N1F7 819 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 SH3TC2Q8TF17 1288 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 TMEM176AQ96HP8 235 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 VCPIP1Q96JH7 1222 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 ILKAPQ9H0C8 392 aaPredicted RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 TAGLN3Q9UI15 199 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 M0QYT0 321 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 SUGP1Q8IWZ8 645 aaKnown RBP15.93■□□□□ 0.14
CIITA-204ENST00000570546 ZNF606Q8WXB4 792 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 PKD2L2Q9NZM6 624 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 PDP2Q9P2J9 529 aa15.93■□□□□ 0.14
CIITA-204ENST00000570546 CYP3A7-CYP3A51PA0A087WV96 503 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 CYP2C9P11712 490 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 PECAM1P16284 738 aaPredicted RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 CYP3A7P24462 503 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 SERPINB8P50452 374 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 ZFPM1Q8IX07 1006 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 CHST7Q9NS84 486 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 TISP43B9A030 160 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 SHBGP04278 402 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 FAM200BP0CF97 657 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 HDAC4P56524 1084 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 LINC00523Q86TU6 105 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 KRT16P08779 473 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 FGRP09769 529 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 RANBP1P43487 201 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 RHBDL3P58872 404 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 MMTAG2Q9BU76 263 aaKnown RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 ASPSCR1Q9BZE9 553 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 AFF4Q9UHB7 1163 aaKnown RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 UBQLN1Q9UMX0 589 aaKnown RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 DNAJC16Q9Y2G8 782 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 GAKO14976 1311 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 TRPC5OSA6NMA1 111 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 ANKRD63C9JTQ0 380 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 H2AFYO75367 372 aaKnown RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 PTPN11Q06124 597 aaPredicted RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 SNAPC2Q13487 334 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 RXFP2Q8WXD0 754 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 CENPTQ96BT3 561 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.92■□□□□ 0.14
CIITA-204ENST00000570546 SIGLEC1Q9BZZ2 1709 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 DTNBP1Q96EV8 351 aa15.92■□□□□ 0.14
CIITA-204ENST00000570546 ZNF263O14978 683 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 CNTFP26441 200 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 RECQLP46063 649 aaPredicted RBP15.91■□□□□ 0.14
CIITA-204ENST00000570546 PPP3CAQ08209 521 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 LAMB3Q13751 1172 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 KPNB1Q14974 876 aaKnown RBP15.91■□□□□ 0.14
CIITA-204ENST00000570546 KATNAL1Q9BW62 490 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 IDI2Q9BXS1 227 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 KIF1AQ12756 1690 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 CTSHP09668 335 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 PKN2Q16513 984 aaKnown RBP15.91■□□□□ 0.14
CIITA-204ENST00000570546 DGKDQ16760 1214 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 GLRA4Q5JXX5 417 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 IRF2BP1Q8IU81 584 aa15.91■□□□□ 0.14
CIITA-204ENST00000570546 MAP4K3Q8IVH8 894 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms