RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ATRIPQ8WXE1 791 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 MYLPFQ96A32 169 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 ZNF512Q96ME7 567 aaPredicted RBP18.34■□□□□ 0.53
CLN3-217ENST00000565354 CRACR2AQ9BSW2 395 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 MED10Q9BTT4 135 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 OSBPL6Q9BZF3 934 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 DPEP3Q9H4B8 488 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 CRTAC1Q9NQ79 661 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 HSFX1Q9UBD0 423 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 ATXN1P54253 815 aaKnown RBP18.33■□□□□ 0.52
CLN3-217ENST00000565354 CSTF1Q05048 431 aaKnown RBP18.33■□□□□ 0.52
CLN3-217ENST00000565354 ORC1Q13415 861 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 UBXN2BQ14CS0 331 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 EXOC3L4Q17RC7 722 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 SLC44A4Q53GD3 710 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 FAM171BQ6P995 826 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 MTSS1LQ765P7 747 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 GRASPQ7Z6J2 395 aaPredicted RBP18.33■□□□□ 0.52
CLN3-217ENST00000565354 ACOT1Q86TX2 421 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 FUBP3Q96I24 572 aaKnown RBP eCLIP18.33■□□□□ 0.52
CLN3-217ENST00000565354 NT5C1AQ9BXI3 368 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 VPS16Q9H269 839 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 CISHQ9NSE2 258 aa18.33■□□□□ 0.52
CLN3-217ENST00000565354 MTF2Q9Y483 593 aaPredicted RBP18.33■□□□□ 0.52
CLN3-217ENST00000565354 NOTCH4Q99466 2003 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 FAM170BA6NMN3 283 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 SOAT2O75908 522 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 VNN2O95498 520 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 CAVIN2O95810 425 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 HAPLN1P10915 354 aaPredicted RBP18.32■□□□□ 0.52
CLN3-217ENST00000565354 PTPN2P17706 415 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 MAGEA9P43362 315 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 RPL10AP62906 217 aaKnown RBP18.32■□□□□ 0.52
CLN3-217ENST00000565354 NTHL1P78549 312 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 INCA1Q0VD86 236 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 KRT31Q15323 416 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 CCDC142Q17RM4 750 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 ZNF394Q53GI3 561 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 FKBP15Q5T1M5 1219 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 SCN4BQ8IWT1 228 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 TTC9BQ8N6N2 239 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 ZBTB44Q8NCP5 570 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 FGF13Q92913 245 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 SECISBP2LQ93073 1101 aaKnown RBP18.32■□□□□ 0.52
CLN3-217ENST00000565354 PKMYT1Q99640 499 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 ARID3AQ99856 593 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 CRISPLD1Q9H336 500 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 FAM124BQ9H5Z6 455 aaPredicted RBP18.32■□□□□ 0.52
CLN3-217ENST00000565354 ABCB6Q9NP58 842 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 NME7Q9Y5B8 376 aa18.32■□□□□ 0.52
CLN3-217ENST00000565354 GTPBP10A4D1E9 387 aaKnown RBP18.31■□□□□ 0.52
CLN3-217ENST00000565354 PRR5-ARHGAP8B1AHC4 643 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 GOLGA6L19H0YKK7 550 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 CILPO75339 1184 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 POU2F2P09086 479 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 BDNFP23560 247 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 CYP2F1P24903 491 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 ANXA13P27216 316 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 ARHGAP8P85298 464 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 PFKPQ01813 784 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 NCAPHQ15003 741 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 CFAP221Q4G0U5 840 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 MIIPQ5JXC2 388 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 RRAGAQ7L523 313 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 ITIH5Q86UX2 942 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 DHX40Q8IX18 779 aaKnown RBP18.31■□□□□ 0.52
CLN3-217ENST00000565354 PCED1BQ96HM7 432 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 FAM81BQ96LP2 452 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 LPIN3Q9BQK8 851 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 CORO1BQ9BR76 489 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 EPC1Q9H2F5 836 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 ZSCAN32Q9NX65 697 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 HMGXB4Q9UGU5 601 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 SMG5Q9UPR3 1016 aaKnown RBP18.31■□□□□ 0.52
CLN3-217ENST00000565354 F5P12259 2224 aa18.31■□□□□ 0.52
CLN3-217ENST00000565354 SLC9A1P19634 815 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 GRIK1P39086 918 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 COPB1P53618 953 aaKnown RBP18.3■□□□□ 0.52
CLN3-217ENST00000565354 LMNB2Q03252 620 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 PABPC1LQ4VXU2 614 aaKnown RBP18.3■□□□□ 0.52
CLN3-217ENST00000565354 CYP4A22Q5TCH4 519 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 TRIM65Q6PJ69 517 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 PDZD4Q76G19 769 aaPredicted RBP18.3■□□□□ 0.52
CLN3-217ENST00000565354 ARHGEF19Q8IW93 802 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 LMO3Q8TAP4 145 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 GIPC2Q8TF65 315 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 NELL1Q92832 810 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 HEXIM2Q96MH2 286 aaKnown RBP18.3■□□□□ 0.52
CLN3-217ENST00000565354 ELOVL4Q9GZR5 314 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 LTB4R2Q9NPC1 389 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 UBE2TQ9NPD8 197 aaPredicted RBP18.3■□□□□ 0.52
CLN3-217ENST00000565354 ASAH2Q9NR71 780 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 FAM49BQ9NUQ9 324 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 HCFC1R1Q9NWW0 138 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 CDV3Q9UKY7 258 aaKnown RBP18.3■□□□□ 0.52
CLN3-217ENST00000565354 ASB3Q9Y575 518 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 PCDHB4Q9Y5E5 795 aa18.3■□□□□ 0.52
CLN3-217ENST00000565354 CHD6Q8TD26 2715 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 LILRB5O75023 590 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 RHOP08100 348 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms