RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 IRX1P78414 480 aaPredicted RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 SP2Q02086 613 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 SLC25A11Q02978 314 aaKnown RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 KLC1Q07866 573 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 PTPN20Q4JDL3 420 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 SNRNP48Q6IEG0 339 aaKnown RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 ZNF333Q96JL9 665 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 PPCSQ9HAB8 311 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 SSU72Q9NP77 194 aaKnown RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 H0YCG3 227 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 DLDP09622 509 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 ACADSP16219 412 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 RFC5P40937 340 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 EIF3EP60228 445 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 BIRC2Q13490 618 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 RCN2Q14257 317 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 XKR3Q5GH77 459 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 CTAGE3PQ8IX95 158 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 ZNF398Q8TD17 642 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 SCG3Q8WXD2 468 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 NMUR2Q9GZQ4 415 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 ZNF395Q9H8N7 513 aaPredicted RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 QTRT2Q9H974 415 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 NXF1Q9UBU9 619 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 CYTH4Q9UIA0 394 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 WNT10BO00744 389 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 RBP3P10745 1247 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 KDELR1P24390 212 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 VHLP40337 213 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 RAP1GAPP47736 663 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 OSTNP61366 133 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 TGFB2P61812 414 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 TFAMQ00059 246 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 CDK16Q00536 496 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 ENPEPQ07075 957 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 SLFN12LQ6IEE8 588 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 CDHR3Q6ZTQ4 885 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 PRPF39Q86UA1 669 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 KCTD6Q8NC69 237 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 FBXO27Q8NI29 283 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 LRRN4Q8WUT4 740 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 ZNF668Q96K58 619 aaPredicted RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 CYTH2Q99418 400 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 PPP1R12CQ9BZL4 782 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 PORCNQ9H237 461 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 PIDD1Q9HB75 910 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 MAP3K20Q9NYL2 800 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 PGAP2Q9UHJ9 254 aa13.81□□□□□ -0.2
CLN3-210ENST00000563874 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.81□□□□□ -0.2
CLN3-210ENST00000563874 CCDC195A0A1B0GUA6 201 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 FCHO1O14526 889 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 DKC1O60832 514 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLN3-210ENST00000563874 MAP3K6O95382 1288 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 INHBAP08476 426 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 PTPN7P35236 360 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 MRPS35P82673 323 aaKnown RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 MMRN1Q13201 1228 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 CIAPIN1Q6FI81 312 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 CCDC62Q6P9F0 684 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 PDCD7Q8N8D1 485 aaKnown RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 SPATA18Q8TC71 538 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 SKA1Q96BD8 255 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 CFAP36Q96G28 342 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 SPATS2LQ9NUQ6 558 aaKnown RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLN3-210ENST00000563874 MARCOQ9UEW3 520 aaPredicted RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 WASF2Q9Y6W5 498 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 SMIM24O75264 130 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 LDHAP00338 332 aaKnown RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 KITP10721 976 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 ETV4P43268 484 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 PSMC1P62191 440 aaKnown RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 THOC5Q13769 683 aaKnown RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 PRKD1Q15139 912 aaPredicted RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 RNF220Q5VTB9 566 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 BBS12Q6ZW61 710 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 UBR7Q8N806 425 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 NSUN6Q8TEA1 469 aaKnown RBP13.8□□□□□ -0.2
CLN3-210ENST00000563874 SLC7A3Q8WY07 619 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 SYNCQ9H7C4 482 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 ADGRA2Q96PE1 1338 aa13.8□□□□□ -0.2
CLN3-210ENST00000563874 E7ESA3 106 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 PIK3R2O00459 728 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 LSM8O95777 96 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 LMNAP02545 664 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 ZNF200P98182 395 aaPredicted RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 DPYSL3Q14195 570 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 SPDYAQ5MJ70 313 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 FAXCQ5TGI0 409 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 FAM83AQ86UY5 434 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 CDR2LQ86X02 465 aaPredicted RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 STMN2Q93045 179 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 ALKBH8Q96BT7 664 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 OXNAD1Q96HP4 312 aaPredicted RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 APOPT1Q96IL0 206 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 NIF3L1Q9GZT8 377 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 FZD1Q9UP38 647 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 IQANK1A0A1B0GTG1 560 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 SIGLEC16A6NMB1 481 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 H3BRJ5 948 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms