RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ERLIN1O75477 346 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 CFHP08603 1231 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 IL9P15248 144 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 COMTP21964 271 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 CTNNA2P26232 953 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 BCAR1P56945 870 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 ADAM15Q13444 863 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 SMAD4Q13485 552 aaKnown RBP9.43□□□□□ -0.9
VPS39-207ENST00000563692 MAMLD1Q13495 774 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 CAMK1Q14012 370 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 ZNF268Q14587 947 aaPredicted RBP9.43□□□□□ -0.9
VPS39-207ENST00000563692 SMC1AQ14683 1233 aaKnown RBP9.43□□□□□ -0.9
VPS39-207ENST00000563692 BRD3Q15059 726 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 PLEKHA7Q6IQ23 1121 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 DNAJC24Q6P3W2 148 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 DCUN1D2Q6PH85 259 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 LCLAT1Q6UWP7 414 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 MMS22LQ6ZRQ5 1243 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 TMC7Q7Z402 723 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 GJD3Q8N144 294 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 TOP6BLQ8N6T0 577 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 WHAMMQ8TF30 809 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 TFAP2BQ92481 460 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 LPPQ93052 612 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 C18orf8Q96DM3 657 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 DDX27Q96GQ7 796 aaKnown RBP9.43□□□□□ -0.9
VPS39-207ENST00000563692 TNIP3Q96KP6 325 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 PPP1R10Q96QC0 940 aaKnown RBP9.43□□□□□ -0.9
VPS39-207ENST00000563692 PARD6BQ9BYG5 372 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 ELOVL4Q9GZR5 314 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 RSAD1Q9HA92 442 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 KANSL3Q9P2N6 904 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 HCSTQ9UBK5 93 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 HESX1Q9UBX0 185 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 STK39Q9UEW8 545 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 PRKAG3Q9UGI9 489 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 ANAPC7Q9UJX3 599 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 TTC7AQ9ULT0 858 aaPredicted RBP9.43□□□□□ -0.9
VPS39-207ENST00000563692 PCDHA3Q9Y5H8 950 aa9.43□□□□□ -0.9
VPS39-207ENST00000563692 GOLGA6L10A0A0M3HER8 536 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 FAM170AA1A519 330 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 ARHGEF37A1IGU5 675 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 CCDC188H7C350 402 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 PDE2AO00408 941 aaPredicted RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 DDX3YO15523 660 aaKnown RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 ATMINO43313 823 aaPredicted RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 TBX10O75333 385 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 MICAL2O94851 1124 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 PROSCO94903 275 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 RHOXF2BP0C7M4 288 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 SETSIPP0DME0 302 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 PBX3P40426 434 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 CETN2P41208 172 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 RWDD2BP57060 319 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 SLC8A3P57103 927 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 LILRA4P59901 499 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 PSMC1P62191 440 aaKnown RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 RBM10P98175 930 aaKnown RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 PTP4A2Q12974 167 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 PIGHQ14442 188 aaPredicted RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 LONRF2Q1L5Z9 754 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 SEL1L2Q5TEA6 688 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 DENND1BQ6P3S1 775 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 TMCO3Q6UWJ1 677 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 ADGRD2Q7Z7M1 963 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 ADHFE1Q8IWW8 467 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 CRYBG2Q8N1P7 616 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 SLC39A11Q8N1S5 342 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 RASGEF1CQ8N431 466 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 WDTC1Q8N5D0 677 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 C1orf131Q8NDD1 294 aaKnown RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 IPO4Q8TEX9 1081 aaKnown RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 RUBCNQ92622 972 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 MS4A14Q96JA4 679 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 UROC1Q96N76 676 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 GAD1Q99259 594 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 RHOXF2Q9BQY4 288 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 ZSWIM1Q9BR11 485 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 MRPL45Q9BRJ2 306 aaKnown RBP9.42□□□□□ -0.9
VPS39-207ENST00000563692 CXCL16Q9H2A7 254 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 GOLPH3Q9H4A6 298 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 TBC1D13Q9NVG8 400 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS39-207ENST00000563692 NLRC5Q86WI3 1866 aa9.42□□□□□ -0.9
VPS39-207ENST00000563692 TCF20Q9UGU0 1960 aaKnown RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 TMEM191CA6NGB0 347 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 ARL5CA6NH57 179 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 SIGLEC16A6NMB1 481 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 M0QYV0 167 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 O00370 1275 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 KRIT1O00522 736 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 CYB561D2O14569 222 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 PTGESO14684 152 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 FSCN2O14926 492 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 PER2O15055 1255 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 LINC01565O15544 149 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 MBTPS2O43462 519 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 KRT3P12035 628 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 ALADP13716 330 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 H2AFXP16104 143 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms