RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TRAPPC11Q7Z392 1133 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 CAMKK1Q8N5S9 505 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 MRPS31Q92665 395 aaKnown RBP20.31■□□□□ 0.84
VPS35-202ENST00000561713 TCEAL3Q969E4 200 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 ELMO3Q96BJ8 720 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 SLC22A12Q96S37 553 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 CGRRF1Q99675 332 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 MRPL45Q9BRJ2 306 aaKnown RBP20.31■□□□□ 0.84
VPS35-202ENST00000561713 GZF1Q9H116 711 aaPredicted RBP20.31■□□□□ 0.84
VPS35-202ENST00000561713 ABCB6Q9NP58 842 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 ZMYM5Q9UJ78 669 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 PCDHGA5Q9Y5G8 931 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 ZZEF1O43149 2961 aa20.31■□□□□ 0.84
VPS35-202ENST00000561713 MYOFQ9NZM1 2061 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 AKAP3O75969 853 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 TNNI1P19237 187 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 DDX6P26196 483 aaKnown RBP eCLIP20.3■□□□□ 0.84
VPS35-202ENST00000561713 LHX1P48742 406 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 RPL10AP62906 217 aaKnown RBP20.3■□□□□ 0.84
VPS35-202ENST00000561713 SHC2P98077 582 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 PLK5Q496M5 336 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 MMS19Q96T76 1030 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 LSM14BQ9BX40 385 aaKnown RBP20.3■□□□□ 0.84
VPS35-202ENST00000561713 DUSP15Q9H1R2 295 aaPredicted RBP20.3■□□□□ 0.84
VPS35-202ENST00000561713 MAGEF1Q9HAY2 307 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 FAM13BQ9NYF5 915 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 SERTAD1Q9UHV2 236 aa20.3■□□□□ 0.84
VPS35-202ENST00000561713 DCLK1O15075 740 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 KCNK5O95279 499 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 DRD1P21728 446 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 AMPD2Q01433 879 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 CYP27A1Q02318 531 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 PSMD6Q15008 389 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 SURF1Q15526 300 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 CFAP221Q4G0U5 840 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 MDH1BQ5I0G3 518 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 CC2D1AQ6P1N0 951 aaPredicted RBP20.29■□□□□ 0.84
VPS35-202ENST00000561713 LIMS2Q7Z4I7 341 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 MON1AQ86VX9 555 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 XXYLT1Q8NBI6 393 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 RPLP0P6Q8NHW5 317 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 PLEKHO2Q8TD55 490 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 FNBP1Q96RU3 617 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 P2RY13Q9BPV8 354 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 KIF9Q9HAQ2 790 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 VPS45Q9NRW7 570 aa20.29■□□□□ 0.84
VPS35-202ENST00000561713 RALYQ9UKM9 306 aaKnown RBP20.29■□□□□ 0.84
VPS35-202ENST00000561713 C2orf78A6NCI8 922 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 ACTN4O43707 911 aaKnown RBP20.28■□□□□ 0.84
VPS35-202ENST00000561713 CLSTN1O94985 981 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 CST3P01034 146 aaPredicted RBP20.28■□□□□ 0.84
VPS35-202ENST00000561713 CKMP06732 381 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 WARSP23381 471 aaKnown RBP20.28■□□□□ 0.84
VPS35-202ENST00000561713 BDNFP23560 247 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 GJA4P35212 333 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 USP46P62068 366 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 RNF43Q68DV7 783 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 FAM171BQ6P995 826 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 HS2ST1Q7LGA3 356 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 SPATA18Q8TC71 538 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 EZH1Q92800 747 aaPredicted RBP20.28■□□□□ 0.84
VPS35-202ENST00000561713 TRMT2BQ96GJ1 504 aaKnown RBP20.28■□□□□ 0.84
VPS35-202ENST00000561713 CYP2S1Q96SQ9 504 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 DPEP3Q9H4B8 488 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 CDH9Q9ULB4 789 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 SPEGQ15772 3267 aa20.28■□□□□ 0.84
VPS35-202ENST00000561713 CACNA2D1P54289 1103 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 USP4Q13107 963 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 ZNF268Q14587 947 aaPredicted RBP20.27■□□□□ 0.84
VPS35-202ENST00000561713 PDGFRLQ15198 375 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 BMT2Q1RMZ1 405 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 PSAPL1Q6NUJ1 521 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 SCARA5Q6ZMJ2 495 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 C4orf50Q6ZRC1 276 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 KIAA0895Q8NCT3 520 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 ZNF516Q92618 1163 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 PCED1BQ96HM7 432 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 FUBP3Q96I24 572 aaKnown RBP eCLIP20.27■□□□□ 0.84
VPS35-202ENST00000561713 SMYD3Q9H7B4 428 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 ECT2Q9H8V3 914 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 KIAA1586Q9HCI6 787 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 UXTQ9UBK9 157 aaPredicted RBP20.27■□□□□ 0.84
VPS35-202ENST00000561713 WNT6Q9Y6F9 365 aa20.27■□□□□ 0.84
VPS35-202ENST00000561713 SOBPA7XYQ1 873 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 KLRC4O43908 158 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 MYL6P60660 151 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 TNNC1P63316 161 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 CREB5Q02930 508 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 MTF1Q14872 753 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 ZNF77Q15935 545 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 FBXO43Q4G163 708 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 SYT13Q7L8C5 426 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 CEP57L1Q8IYX8 460 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 CPA6Q8N4T0 437 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 ARL14EPQ8N8R7 260 aaPredicted RBP20.26■□□□□ 0.83
VPS35-202ENST00000561713 OR6B3Q8NGW1 331 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 MYRFLQ96LU7 910 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 TMEM30AQ9NV96 361 aa20.26■□□□□ 0.83
VPS35-202ENST00000561713 DUS2Q9NX74 493 aaKnown RBP20.26■□□□□ 0.83
VPS35-202ENST00000561713 MAGEC2Q9UBF1 373 aaPredicted RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms