RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 ST13P5Q8NFI4 369 aaPredicted RBP11.33□□□□□ -0.6
LINC00239-201ENST00000556973 JAKMIP2Q96AA8 810 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 ASIC4Q96FT7 647 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 SMOQ99835 787 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 KXD1Q9BQD3 176 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 TUBGCP2Q9BSJ2 902 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 TTLL2Q9BWV7 592 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 PLA2G2FQ9BZM2 168 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 INTS2Q9H0H0 1204 aaKnown RBP11.33□□□□□ -0.6
LINC00239-201ENST00000556973 DMAP1Q9NPF5 467 aaPredicted RBP11.33□□□□□ -0.6
LINC00239-201ENST00000556973 C11orf16Q9NQ32 467 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 SLC2A4RGQ9NR83 387 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 SAMSN1Q9NSI8 373 aaKnown RBP11.33□□□□□ -0.6
LINC00239-201ENST00000556973 FAM49BQ9NUQ9 324 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 TMEM30AQ9NV96 361 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 NFE2L3Q9Y4A8 694 aa11.33□□□□□ -0.6
LINC00239-201ENST00000556973 FAM86C2PA6NEL3 165 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 TNFRSF10BO14763 440 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 BEST1O76090 585 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 FAM200BP0CF97 657 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PFKLP17858 780 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PSMC3P17980 439 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 AVPR1AP37288 418 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 VIPR2P41587 438 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 MAP3K7CLP57077 242 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PFKPQ01813 784 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 EXOC3L4Q17RC7 722 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 TXNDC8Q6A555 127 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PHLDB3Q6NSJ2 640 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 RRAGAQ7L523 313 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 ENOSF1Q7L5Y1 443 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 MFSD6LQ8IWD5 586 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 CMTM8Q8IZV2 173 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 UBR7Q8N806 425 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 MAB21L3Q8N8X9 362 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 DEPDC1BQ8WUY9 529 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 OVCA2Q8WZ82 227 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PBXIP1Q96AQ6 731 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 SLITRK1Q96PX8 696 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 LRFN3Q9BTN0 628 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 TRMT61BQ9BVS5 477 aaKnown RBP11.32□□□□□ -0.6
LINC00239-201ENST00000556973 DUSP16Q9BY84 665 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 UBXN6Q9BZV1 441 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 NAT10Q9H0A0 1025 aaKnown RBP11.32□□□□□ -0.6
LINC00239-201ENST00000556973 NDST4Q9H3R1 872 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PNPLA8Q9NP80 782 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 UBE2TQ9NPD8 197 aaPredicted RBP11.32□□□□□ -0.6
LINC00239-201ENST00000556973 KRT82Q9NSB4 513 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 OBP2AQ9NY56 170 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 IL37Q9NZH6 218 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 TRPM5Q9NZQ8 1165 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 GCNT4Q9P109 453 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PCDHB4Q9Y5E5 795 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 PATJQ8NI35 1801 aa11.32□□□□□ -0.6
LINC00239-201ENST00000556973 ZNF840PA6NDX5 716 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 HEPACAM2A8MVW5 462 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 DPYSL4O14531 572 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 CFHP08603 1231 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 PAEPP09466 180 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 VDRP11473 427 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 SLC9A1P19634 815 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 ACO1P21399 889 aaKnown RBP11.31□□□□□ -0.6
LINC00239-201ENST00000556973 ADORA2BP29275 332 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 PDE6CP51160 858 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 MFAP3P55082 362 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 SLC8A3P57103 927 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 USP46P62068 366 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 MYL5Q02045 173 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 TYRO3Q06418 890 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 TAF10Q12962 218 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 SKOR2Q2VWA4 1001 aaPredicted RBP11.31□□□□□ -0.6
LINC00239-201ENST00000556973 HSP90AA4PQ58FG1 418 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 MIIPQ5JXC2 388 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 ARHGAP17Q68EM7 881 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 SMYD5Q6GMV2 418 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 TRIM65Q6PJ69 517 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 TMEM270Q6UE05 265 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 VITQ6UXI7 678 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 CLEC20AQ6ZU45 233 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 ARHGEF19Q8IW93 802 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 CELF5Q8N6W0 485 aaKnown RBP11.31□□□□□ -0.6
LINC00239-201ENST00000556973 ANKRD52Q8NB46 1076 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 PDZD8Q8NEN9 1154 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 ZMIZ2Q8NF64 920 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 CRACR2AQ9BSW2 395 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 FBXO44Q9H4M3 255 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 TDP1Q9NUW8 608 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 FANCLQ9NW38 375 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 FBXL21Q9UKT6 434 aa11.31□□□□□ -0.6
LINC00239-201ENST00000556973 TRAV19A0A0A6YYK7 116 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 FAM92AA1XBS5 289 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 RNF225M0QZC1 329 aaPredicted RBP11.3□□□□□ -0.6
LINC00239-201ENST00000556973 ZNF263O14978 683 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 TADA3O75528 432 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 TPM2P07951 284 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 USP17L7P0C7H9 530 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 NPR3P17342 541 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 HDCP19113 662 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 PON1P27169 355 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 SLC5A3P53794 718 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms