RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	hCG_1984214	I3L0E3	225 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	TBX3	O15119	743 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	PRPF3	O43395	683 aa	Known RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	RGS10	O43665	173 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	RASAL1	O95294	804 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	MAP4K4	O95819	1239 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	ZBED1	O96006	694 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	PDHA1	P08559	390 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	PHKG2	P15735	406 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	ZKSCAN1	P17029	563 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	ZNF37A	P17032	561 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	ENG	P17813	658 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	SUMO3	P55854	103 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	CCNI	Q14094	377 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	LRRC41	Q15345	812 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	CNGA2	Q16280	664 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	TMEM63B	Q5T3F8	832 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	RNF220	Q5VTB9	566 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	CACHD1	Q5VU97	1274 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	ZKSCAN2	Q63HK3	967 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	CCAR1	Q8IX12	1150 aa	Known RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	YAF2	Q8IY57	180 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	IZUMO1	Q8IYV9	350 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	SOCS4	Q8WXH5	440 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	ANKS1A	Q92625	1134 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	TTC17	Q96AE7	1141 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	DAZAP1	Q96EP5	407 aa	Known RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	ZNF668	Q96K58	619 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	NT5C1B	Q96P26	610 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	SEMA4C	Q9C0C4	833 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	CXorf36	Q9H7Y0	433 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	DUSP22	Q9NRW4	184 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	USP22	Q9UPT9	525 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	SSX2IP	Q9Y2D8	614 aa		3.41	□□□□□ -1.86
CD44-238	ENST00000534296	MRPS17	Q9Y2R5	130 aa	Known RBP	3.41	□□□□□ -1.86
CD44-238	ENST00000534296	TRIM43B	A6NCK2	446 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	MANSC4	A6NHS7	340 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	AQP7P3	A6NL99	342 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	UBE2Q2L	H0YL09	131 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	PYCARD-AS1	I3L0S3	204 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296		M0R3H8	397 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	MYO1F	O00160	1098 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	FOXN3	O00409	490 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	KIF3B	O15066	747 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	PLIN1	O60240	522 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	RBMXL2	O75526	392 aa	Known RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	C1QL1	O75973	258 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	HRG	P04196	525 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	ELFN1	P0C7U0	828 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	KCNA3	P22001	575 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	CERS1	P27544	350 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	ITPKB	P27987	946 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	EPHA3	P29320	983 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	KRTAP1-1	Q07627	177 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	SRSF4	Q08170	494 aa	Known RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	GBX1	Q14549	363 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	EZH2	Q15910	746 aa	Known RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	DCAF12L1	Q5VU92	463 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	MZT2A	Q6P582	158 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	TRIM72	Q6ZMU5	477 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	CAND1	Q86VP6	1230 aa	Known RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	RAVER1	Q8IY67	606 aa	Known RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	ABRA	Q8N0Z2	381 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	SDR16C5	Q8N3Y7	309 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	SIRT6	Q8N6T7	355 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	SEMA6D	Q8NFY4	1073 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	PPP2R3C	Q969Q6	453 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	TRIM43	Q96BQ3	446 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	NMD3	Q96D46	503 aa	Known RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	RSPRY1	Q96DX4	576 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	FSD1L	Q9BXM9	530 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	STK31	Q9BXU1	1019 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	C22orf23	Q9BZE7	217 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	SNX15	Q9NRS6	342 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	GEMIN8	Q9NWZ8	242 aa	Known RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	DLL3	Q9NYJ7	618 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	CDY1	Q9Y6F8	540 aa		3.4	□□□□□ -1.87
CD44-238	ENST00000534296	FRMPD2	Q68DX3	1309 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-238	ENST00000534296	SMIM22	K7EJ46	135 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	TPP1	O14773	563 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	SRGAP2	O75044	1071 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	USP1	O94782	785 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	TJP3	O95049	919 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	PARN	O95453	639 aa	Known RBP	3.39	□□□□□ -1.87
CD44-238	ENST00000534296	KRT18	P05783	430 aa	Known RBP	3.39	□□□□□ -1.87
CD44-238	ENST00000534296	CSF1R	P07333	972 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	JUP	P14923	745 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	PEX2	P28328	305 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	PCSK6	P29122	969 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	BCAT1	P54687	386 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	HOXA4	Q00056	320 aa	Predicted RBP	3.39	□□□□□ -1.87
CD44-238	ENST00000534296	SLC29A2	Q14542	456 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	SRSF7	Q16629	238 aa	Known RBP eCLIP	3.39	□□□□□ -1.87
CD44-238	ENST00000534296	TMEM119	Q4V9L6	283 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	C4orf46	Q504U0	113 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	APOA5	Q6Q788	366 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	SERPINA13P	Q6UXR4	307 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	NAPRT	Q6XQN6	538 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296		Q6ZWC4	215 aa		3.39	□□□□□ -1.87
CD44-238	ENST00000534296	CHST15	Q7LFX5	561 aa	Predicted RBP	3.39	□□□□□ -1.87

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