RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MMRN2Q9H8L6 949 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 TMEM8AQ9HCN3 771 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 C2orf42Q9NWW7 574 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 OBP2AQ9NY56 170 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 KIAA1549LQ6ZVL6 1849 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 FAM186AA6NE01 2351 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 ZNF840PA6NDX5 716 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 ANTXRLA6NF34 631 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 BIN1O00499 593 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 ZNF263O14978 683 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 CILPO75339 1184 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 FGF19O95750 216 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 OLFM2O95897 454 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 CHRNB1P11230 501 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 TDGF1P13385 188 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 ARSAP15289 507 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 CCNE1P24864 410 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 GRIK1P39086 918 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 PIK3CAP42336 1068 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 MRE11P49959 708 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 ZNF77Q15935 545 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 GAB4Q2WGN9 574 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 GPRIN1Q7Z2K8 1008 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 UBR7Q8N806 425 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 ARL14EPQ8N8R7 260 aaPredicted RBP11.34□□□□□ -0.59
CD44-227ENST00000528086 BPIFB1Q8TDL5 484 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 IRF7Q92985 503 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 WBP2Q969T9 261 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 CCDC47Q96A33 483 aaKnown RBP11.34□□□□□ -0.59
CD44-227ENST00000528086 PRRX2Q99811 253 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 OSBPL6Q9BZF3 934 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 CSNK1G1Q9HCP0 422 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 RMND1Q9NWS8 449 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 COQ4Q9Y3A0 265 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 PIAS3Q9Y6X2 628 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 OTOGLQ3ZCN5 2332 aa11.34□□□□□ -0.59
CD44-227ENST00000528086 FAM92AA1XBS5 289 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 GOLGA6L4A6NEF3 574 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 PROB1E7EW31 1015 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 STK25O00506 426 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 KIF20AO95235 890 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 OAS1P00973 400 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 ZDHHC11BP0C7U3 371 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 RPL13P26373 211 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 GTF2H1P32780 548 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 CTHP32929 405 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 NBL1P41271 181 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 TAF10Q12962 218 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 USP4Q13107 963 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 ZNF268Q14587 947 aaPredicted RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 UBXN2BQ14CS0 331 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 MAPRE1Q15691 268 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 ARHGAP15Q53QZ3 475 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 DENND5BQ6ZUT9 1274 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 ASCL5Q7RTU5 278 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 CELF5Q8N6W0 485 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 LMO3Q8TAP4 145 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 SLC2A14Q8TDB8 520 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 TAF4BQ92750 862 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 EZH1Q92800 747 aaPredicted RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 E2F7Q96AV8 911 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 SHDQ96IW2 340 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 ZFRQ96KR1 1074 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 LINC00597Q9H2U6 94 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 FBRSL1Q9HCM7 1045 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 GKN1Q9NS71 199 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 RBM12Q9NTZ6 932 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 FAM49BQ9NUQ9 324 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 TDP1Q9NUW8 608 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 CHMP5Q9NZZ3 219 aa11.33□□□□□ -0.6
CD44-227ENST00000528086 R3HCC1Q9Y3T6 440 aaKnown RBP11.33□□□□□ -0.6
CD44-227ENST00000528086 ZNF292O60281 2723 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 DCHS1Q96JQ0 3298 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 SOBPA7XYQ1 873 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 SPECC1L-ADORA2AF8WAN1 911 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 CETN3O15182 167 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 SLC16A3O15427 465 aaKnown RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 SMC2O95347 1197 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 CHRM1P11229 460 aaPredicted RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 DDX6P26196 483 aaKnown RBP eCLIP11.32□□□□□ -0.6
CD44-227ENST00000528086 RAD23BP54727 409 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 MLLT6P55198 1093 aaPredicted RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 FKBP3Q00688 224 aaKnown RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 KRT39Q6A163 491 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 PKN3Q6P5Z2 889 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 ZNF852Q6ZMS4 543 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 FRMD5Q7Z6J6 570 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 UNC93AQ86WB7 457 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 C1orf210Q8IVY1 113 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 MRPS31Q92665 395 aaKnown RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 NELL1Q92832 810 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 ATOH1Q92858 354 aaPredicted RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 DHTKD1Q96HY7 919 aaPredicted RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 CEP295NLQ96MC4 621 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 HNRNPABQ99729 332 aaKnown RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 NIF3L1Q9GZT8 377 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 EBF3Q9H4W6 596 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 CYP3A43Q9HB55 503 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 KRT82Q9NSB4 513 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 OSER1Q9NX31 292 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms