RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 SLIT3O75094 1523 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 CDKL5O76039 1030 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 SPDEFO95238 335 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 LMNAP02545 664 aaKnown RBP4.63□□□□□ -1.67
NUP54-212ENST00000513248 RARBP10826 455 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 HSPA5P11021 654 aaKnown RBP4.63□□□□□ -1.67
NUP54-212ENST00000513248 HDCP19113 662 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 LMO1P25800 156 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 GNALP38405 381 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 TNNT2P45379 298 aaPredicted RBP4.63□□□□□ -1.67
NUP54-212ENST00000513248 HSD11B2P80365 405 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 TP53BP2Q13625 1128 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 HABP2Q14520 560 aaPredicted RBP4.63□□□□□ -1.67
NUP54-212ENST00000513248 RRS1Q15050 365 aaKnown RBP4.63□□□□□ -1.67
NUP54-212ENST00000513248 SPDYE7PQ495Y7 208 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 APOA5Q6Q788 366 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 Q6YL49 198 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 CFAP52Q8N1V2 620 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 PDPRQ8NCN5 879 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 IL31RAQ8NI17 732 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 POC1BQ8TC44 478 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 KBTBD7Q8WVZ9 684 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 TIFAQ96CG3 184 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 RNF31Q96EP0 1072 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 PNKPQ96T60 521 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 TRIM54Q9BYV2 358 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 BHMT2Q9H2M3 363 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 BRD9Q9H8M2 597 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 RSAD1Q9HA92 442 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 CYP4F11Q9HBI6 524 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 MRPS18AQ9NVS2 196 aaKnown RBP4.63□□□□□ -1.67
NUP54-212ENST00000513248 RNF181Q9P0P0 153 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 USP25Q9UHP3 1055 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 NOX1Q9Y5S8 564 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 NRAPQ86VF7 1730 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 OVOS2A0A0G2JMS6 1433 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 OVOS2A0A0J9YW53 1432 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 OVOS2Q6IE36 1432 aa4.63□□□□□ -1.67
NUP54-212ENST00000513248 SMG6Q86US8 1419 aaKnown RBP4.63□□□□□ -1.67
NUP54-212ENST00000513248 A0A1W2PS29 197 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 MYADML2A6NDP7 307 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 CAPN8A6NHC0 703 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 GPANK1O95872 356 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 CHEK2O96017 543 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 FOSP01100 380 aaPredicted RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 ATXN1P54253 815 aaKnown RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 CXADRP78310 365 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 EXOSC9Q06265 439 aaKnown RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 SEMA5AQ13591 1074 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 CNN3Q15417 329 aaKnown RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 CYP2A13Q16696 494 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 CCDC181Q5TID7 509 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 HECTD2Q5U5R9 776 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 FOXR2Q6PJQ5 311 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 DAAM2Q86T65 1068 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 LCORLQ8N3X6 602 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 SH2D3CQ8N5H7 860 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 FAM156AQ8NDB6 213 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 BEND2Q8NDZ0 799 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 BRIX1Q8TDN6 353 aaKnown RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 ASB10Q8WXI3 467 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 RAPGEF4Q8WZA2 1011 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 IP6K1Q92551 441 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 SARGQ9BW04 601 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 ALOXE3Q9BYJ1 711 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 ARMT1Q9H993 441 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 PACSIN3Q9UKS6 424 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 PCDHA6Q9UN73 950 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 CGNL1Q0VF96 1302 aa4.62□□□□□ -1.67
NUP54-212ENST00000513248 FRMPD2Q68DX3 1309 aaPredicted RBP4.62□□□□□ -1.67
NUP54-212ENST00000513248 PIK3C2AO00443 1686 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 PIPSLA2A3N6 862 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 E7ENX8 843 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 FYB1O15117 783 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 PHGDHO43175 533 aaKnown RBP4.61□□□□□ -1.67
NUP54-212ENST00000513248 SUN1O94901 812 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 TRIM27P14373 513 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 EN2P19622 333 aaPredicted RBP4.61□□□□□ -1.67
NUP54-212ENST00000513248 HOXC9P31274 260 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 SOX8P57073 446 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 TAP1Q03518 808 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 TAP2Q03519 686 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 LLGL1Q15334 1064 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 ABHD17BQ5VST6 288 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 KRT78Q8N1N4 520 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 SUPT20HQ8NEM7 779 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 MAML1Q92585 1016 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 MTFMTQ96DP5 389 aaKnown RBP4.61□□□□□ -1.67
NUP54-212ENST00000513248 ZNF764Q96H86 408 aaPredicted RBP4.61□□□□□ -1.67
NUP54-212ENST00000513248 TINAGL1Q9GZM7 467 aaPredicted RBP4.61□□□□□ -1.67
NUP54-212ENST00000513248 FAM204AQ9H8W3 233 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 SMURF2Q9HAU4 748 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 GALNT9Q9HCQ5 603 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 STK32BQ9NY57 414 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 MTO1Q9Y2Z2 717 aaKnown RBP4.61□□□□□ -1.67
NUP54-212ENST00000513248 KNSTRNQ9Y448 316 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 MAP3K19Q56UN5 1328 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 NSD3Q9BZ95 1437 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms