RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 VWCEQ96DN2 955 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 GDAP2Q9NXN4 497 aa12.81□□□□□ -0.36
HDAC6-230ENST00000488543 TCRBV7S2A1N4TA0A589 114 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 F8W810 466 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 LSP1P33241 339 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 LILRA4P59901 499 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 SKOR1P84550 965 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 SIX1Q15475 284 aaPredicted RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 PAN2Q504Q3 1202 aaKnown RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 CLLU1OSQ5K130 101 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 SEL1L2Q5TEA6 688 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 C1orf53Q5VUE5 145 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 TADA2BQ86TJ2 420 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 C12orf29Q8N999 325 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 UBA3Q8TBC4 463 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 ZNF560Q96MR9 790 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 MCEEQ96PE7 176 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 NAP1L3Q99457 506 aaPredicted RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 LPIN3Q9BQK8 851 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 SLITRK6Q9H5Y7 841 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 IP6K2Q9UHH9 426 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 TBX21Q9UL17 535 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 KPNA7A9QM74 516 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 B4GALT3O60512 393 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 GABRB2P47870 512 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 GATMP50440 423 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 FAM189BP81408 668 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 UBAP2Q5T6F2 1119 aaKnown RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 ACOT1Q86TX2 421 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 XYLT1Q86Y38 959 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 SLC13A5Q86YT5 568 aaPredicted RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 PRELID2Q8N945 189 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 UBLCP1Q8WVY7 318 aaPredicted RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 PPANQ9NQ55 473 aaKnown RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 PRDM5Q9NQX1 630 aaPredicted RBP12.8□□□□□ -0.36
HDAC6-230ENST00000488543 TSPAN16Q9UKR8 245 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 STRIP2Q9ULQ0 834 aa12.8□□□□□ -0.36
HDAC6-230ENST00000488543 RANBP2P49792 3224 aaKnown RBP12.79□□□□□ -0.36
HDAC6-230ENST00000488543 TRIM43BA6NCK2 446 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 PNPLA4P41247 253 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 TAF6P49848 677 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 TAP1Q03518 808 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 LLGL1Q15334 1064 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 CLUL1Q15846 466 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 GOLGA7BQ2TAP0 167 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 PKDCCQ504Y2 493 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 PPP1R26Q5T8A7 1209 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-230ENST00000488543 UNC93AQ86WB7 457 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 ZNF280BQ86YH2 543 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 JOSD2Q8TAC2 188 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-230ENST00000488543 HASPINQ8TF76 798 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 TRIM43Q96BQ3 446 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-230ENST00000488543 PGBD4Q96DM1 585 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 C18orf8Q96DM3 657 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 ATP6V1G3Q96LB4 118 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 HERPUD2Q9BSE4 406 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 DPEP3Q9H4B8 488 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-230ENST00000488543 SIGLEC16A6NMB1 481 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 GOLGA8SH3BPF8 625 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 I3L4J1 428 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 PSTPIP1O43586 416 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 CLTBP09497 229 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 TCF4P15884 667 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 PSMC1P62191 440 aaKnown RBP12.79□□□□□ -0.36
HDAC6-230ENST00000488543 SV2CQ496J9 727 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 DPH6Q7L8W6 267 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 NECAB2Q7Z6G3 386 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 ANKLE1Q8NAG6 615 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 SEPT8Q92599 483 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 MCRS1Q96EZ8 462 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 USTQ9Y2C2 406 aa12.79□□□□□ -0.36
HDAC6-230ENST00000488543 DDHD2O94830 711 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 PDGFRBP09619 1106 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 LMO2P25791 158 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 HSPA9P38646 679 aaKnown RBP12.78□□□□□ -0.36
HDAC6-230ENST00000488543 ZNF268Q14587 947 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-230ENST00000488543 STILQ15468 1287 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 ARHGAP17Q68EM7 881 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 KDM7AQ6ZMT4 941 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 OSTM1Q86WC4 334 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 TTC30AQ86WT1 665 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 RHOT1Q8IXI2 618 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 NIPA2Q8N8Q9 360 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 OR6B3Q8NGW1 331 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 PPM1EQ8WY54 764 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 FTHL17Q9BXU8 183 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 HCSTQ9UBK5 93 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 TIMM13Q9Y5L4 95 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-230ENST00000488543 TDRD15B5MCY1 1934 aaKnown RBP12.78□□□□□ -0.36
HDAC6-230ENST00000488543 F8VP50 259 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 PODXLO00592 558 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 FSCN2O14926 492 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 PHF2O75151 1096 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 EOMESO95936 686 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 ITGB1P05556 798 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 RARAP10276 462 aa12.78□□□□□ -0.36
HDAC6-230ENST00000488543 RFC1P35251 1148 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-230ENST00000488543 ZNF844Q08AG5 666 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms