RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 APEX2Q9UBZ4 518 aa16.85■□□□□ 0.29
UPF3A-208ENST00000484246 KIAA1257Q9ULG3 409 aa16.85■□□□□ 0.29
UPF3A-208ENST00000484246 C5orf42Q9H799 3197 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 AP1G2O75843 785 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 RTN3O95197 1032 aaPredicted RBP16.84■□□□□ 0.29
UPF3A-208ENST00000484246 GJA1P17302 382 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 PFKLP17858 780 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 PON1P27169 355 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 PPP3CCP48454 512 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 LRMPQ12912 555 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 FAM78AQ5JUQ0 283 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 PIP4P2Q8N4L2 257 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 OVCA2Q8WZ82 227 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 KAT5Q92993 513 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 E2F7Q96AV8 911 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 ZSWIM3Q96MP5 696 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 SMOQ99835 787 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 HSD3B7Q9H2F3 369 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 OBP2AQ9NY56 170 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 DOCK8Q8NF50 2099 aa16.84■□□□□ 0.29
UPF3A-208ENST00000484246 SRFP11831 508 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 NPR3P17342 541 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 USP46P62068 366 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 SIGLEC14Q08ET2 396 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 KRT31Q15323 416 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 ANO6Q4KMQ2 910 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 ZNF394Q53GI3 561 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 GPR158Q5T848 1215 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 CLEC20AQ6ZU45 233 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 MON1AQ86VX9 555 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 NUP93Q8N1F7 819 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 SLC44A3Q8N4M1 653 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 STKLD1Q8NE28 680 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 ZSCAN18Q8TBC5 510 aaPredicted RBP16.83■□□□□ 0.28
UPF3A-208ENST00000484246 MRPS31Q92665 395 aaKnown RBP16.83■□□□□ 0.28
UPF3A-208ENST00000484246 KCNK16Q96T55 309 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 EPHX3Q9H6B9 360 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 SIX2Q9NPC8 291 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 SLC2A4RGQ9NR83 387 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 FANCLQ9NW38 375 aa16.83■□□□□ 0.28
UPF3A-208ENST00000484246 LIMA1Q9UHB6 759 aaKnown RBP16.83■□□□□ 0.28
UPF3A-208ENST00000484246 MAGED2Q9UNF1 606 aaPredicted RBP16.83■□□□□ 0.28
UPF3A-208ENST00000484246 PTPRDP23468 1912 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 LRRC10BA6NIK2 292 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 HHLA1C9JL84 531 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 O00370 1275 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 BEST1O76090 585 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 VDRP11473 427 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 SLC9A1P19634 815 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 RFX1P22670 979 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 SLC5A3P53794 718 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 CYP4F8P98187 520 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 STILQ15468 1287 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 MEA1Q16626 185 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 HSP90AA4PQ58FG1 418 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 STXBP5Q5T5C0 1151 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 PPP1R26Q5T8A7 1209 aaPredicted RBP16.82■□□□□ 0.28
UPF3A-208ENST00000484246 DPY19L2P1Q6NXN4 242 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 RRAGAQ7L523 313 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 CREBRFQ8IUR6 639 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 ANKRD52Q8NB46 1076 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 PDZD8Q8NEN9 1154 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 DEPDC1BQ8WUY9 529 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 RSAD2Q8WXG1 361 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 HEXIM2Q96MH2 286 aaKnown RBP16.82■□□□□ 0.28
UPF3A-208ENST00000484246 CRACR2AQ9BSW2 395 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 C1QTNF1Q9BXJ1 281 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 DUSP16Q9BY84 665 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 UBXN6Q9BZV1 441 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 ZFP14Q9HCL3 533 aa16.82■□□□□ 0.28
UPF3A-208ENST00000484246 GPR37L1O60883 481 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 CAVIN2O95810 425 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 OLFM2O95897 454 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 YWHAQP27348 245 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 ADORA2BP29275 332 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 PDE6CP51160 858 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 MFAP3P55082 362 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 ZNF268Q14587 947 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-208ENST00000484246 SGO2Q562F6 1265 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 SNX30Q5VWJ9 437 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 TANGO2Q6ICL3 276 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 TMEM270Q6UE05 265 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 TRIM67Q6ZTA4 783 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 APTXQ7Z2E3 356 aaKnown RBP16.81■□□□□ 0.28
UPF3A-208ENST00000484246 AOPEPQ8N6M6 819 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 RBBP8NLQ8NC74 664 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-208ENST00000484246 SHC3Q92529 594 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 ASIC4Q96FT7 647 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 SLITRK1Q96PX8 696 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 RPP25Q9BUL9 199 aaKnown RBP16.81■□□□□ 0.28
UPF3A-208ENST00000484246 SLC46A2Q9BY10 475 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 SLITRK6Q9H5Y7 841 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 KIF9Q9HAQ2 790 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 UBE2TQ9NPD8 197 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-208ENST00000484246 C11orf16Q9NQ32 467 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 TAB2Q9NYJ8 693 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 PCDHB4Q9Y5E5 795 aa16.81■□□□□ 0.28
UPF3A-208ENST00000484246 SYCE3A1L190 88 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 ZNF840PA6NDX5 716 aa16.8■□□□□ 0.28
UPF3A-208ENST00000484246 LGALS16A8MUM7 142 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms